RNA id: TCONS_00058041


Basic Information

Item Value
RNA id TCONS_00058041
length 821
lncRNA type inter_gene
GC content 0.52
exon number 5
gene id XLOC_028488
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6177586 ~ 6252483 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGAATCAATTAAGCATGGAAGGGAAGGGATCTCTGGGAGGACCGTGGGTTTGGAGAGGCCTTGAGCCCGAGCTTTGGACGCTCTGGAGGTGGGATATCCAGCGGATATGCATAAACGGACTGGAGAGGATGAAAGCTGTTCAGCAGATAAAGCCATAGCAGCCTGTCGGAATCCAGCCACGCCGGCCCTGATTTATGACCAACTCAGTCAAACTCCCTACCACTGTACCTGACAAACACAAAAGGTCTGCTCCATCACACTGAACCTGAGGACACATCCAGCAGCACTCTGATGTTCCCTGCTCTCCCAACATTAAAAAGTCTGGATAAAAGTCTCCTGTAACCTACAGATGGCCACCTGAGGAGAAGTCAAACCATGAGGCCACGCTTGGCTTTCTTGGAAATCACACCTCAGTGACGCACATCACAACTCAATCACCCACGAGCACCATCCAGGCACACACCTCCACCCCCTTGTTGACTTGATTAGGGTTCAGTGGTCTCCTGTTGTGTGCGAGGTGTGAAAGGCACTGCACACTTCTTGAGGAGTTGAGGACAGACTGAGACTctgtactgctgaacagctgtcATTCCCTGCTCACTGTCACACGCCTGCACTTCTGGCAGCTCCACCGCCATCAGCAGCGTTTATTTATCTGACGAGGAGAAACAAGAGCTCCAATAACACCAGGAGCGGATGATGAAGTCTTAGATCATCGTCTGACTCAAACCACCACGAACTAGATGTCCAGCCAGCAGCTTCTGCGGGGAACATCTCGTATCTGGCAGAAATCTCGATGCGATCAGATATCGGACGGTA

Function

GO:

id name namespace
GO:0006399 tRNA metabolic process biological_process
GO:0001510 RNA methylation biological_process
GO:0009451 RNA modification biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057320 lncRNA downstream 60916 6113441 ~ 6116670 (-) True XLOC_028487
TCONS_00055280 lncRNA downstream 351662 5809866 ~ 5825924 (-) False XLOC_028484
TCONS_00058036 lncRNA downstream 431701 5714739 ~ 5745885 (-) True XLOC_028478
TCONS_00055289 lncRNA upstream 158597 6411080 ~ 6416172 (-) True XLOC_028489
TCONS_00058043 lncRNA upstream 324294 6576777 ~ 6580442 (-) False XLOC_028491
TCONS_00058044 lncRNA upstream 324294 6576777 ~ 6580547 (-) False XLOC_028491
TCONS_00058045 lncRNA upstream 326135 6578618 ~ 6580266 (-) True XLOC_028491
TCONS_00055298 lncRNA upstream 552615 6805098 ~ 6805921 (-) True XLOC_028492
TCONS_00055284 mRNA downstream 264248 5906958 ~ 5913338 (-) False XLOC_028486
TCONS_00055285 mRNA downstream 264635 5911341 ~ 5912951 (-) True XLOC_028486
TCONS_00055283 mRNA downstream 313680 5850317 ~ 5863906 (-) True XLOC_028485
TCONS_00055282 mRNA downstream 321386 5850225 ~ 5856200 (-) False XLOC_028485
TCONS_00055281 mRNA downstream 346550 5827140 ~ 5831036 (-) True XLOC_028484
TCONS_00055286 mRNA upstream 87089 6339572 ~ 6373735 (-) False XLOC_028489
TCONS_00055287 mRNA upstream 91940 6344423 ~ 6416155 (-) False XLOC_028489
TCONS_00055288 mRNA upstream 91969 6344452 ~ 6416414 (-) False XLOC_028489
TCONS_00055290 mRNA upstream 170558 6423041 ~ 6567503 (-) False XLOC_028490
TCONS_00055291 mRNA upstream 170869 6423352 ~ 6623645 (-) False XLOC_028490
TCONS_00055263 other downstream 805964 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 1245062 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 1606781 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1680795 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 3491496 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 184281 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 313170 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 932712 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 969597 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 1427496 7679979 ~ 7680095 (-) True XLOC_028504

Expression Profile

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