RNA id: TCONS_00055287


Basic Information

Item Value
RNA id TCONS_00055287
length 936
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_028489
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6339572 ~ 6416414 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGTGCTGGAGGAAAAGGGCGTTCAAAATCCTAAAAAGAAGCTGAAACGTGATGAAACGTTACACAGAAGTCTCAAGGTAATACATCTAACCGTATGTCAGCGTGAAGTGAAGCCATTTTATCTTGTGCTGGAGGAAAAGGGCGTTTAAAATGCAGAACAGAAGCTGAAACTTGATTAAACGTTACACAGAAGTCTCAAGGTTTGATCGCTGATTGCCGTGGGGAATTGTTGTTTTTGAGTGTGTTTAGTATCTAAACATCTGGCTCATGTCCTCGGAGGCTATTTTACCTCCGGAGGGGCCTGAAGGGCCAAAAAAGCAGCTTGAAGAGGAGGCAAACCCACTTCTGTCTAAATCAACAGCTCAGCCTCAGCCTTTGCCCCAGCCAGCAACATCTCTGCAGCATCCTGTCGATGCAGAGGCTTCCAGGCAACAGAATGGCCTACACATGGTGCTAAGCAACGGCCATGGCACACCCCGTGGGGTCACACAGCCTCCCCCATCTATCCACACTTCAGAACCCAGGAAGCTCCCATCACCTGTCTCTCACCGTGTGCAGAAAAAGCTTCGCTCCAGCCTGTCGGTCAACAGCGACAGCAGCAGGAGGAGCAAAAGCAGCTCTACGGGTTCCCATAAACCTGGCTCCACTCCAGAGGACTGCTGCGTCCACTGCATCCTGGCCTGCCTGTTTTGTGAATTTCTCACTCTGTGCAATATGGTGGTGGCTCAGGCCTCGTGCGGCACCTGCACATCAGAAgcctgttgctgctgctgctgcgctgacGACCTGGGAGACGACTGCAACTGTCCCTGTGACATGGACTGTGGCATTATGGATGCGTGCTGCGAGTCCTCGGACTGCCTGGAGATCTGCATGGAGTGCTGCGGAATCTGTTTCCCAACATAAACAATCTACTGCATTTATACGACGGCCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000110535

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058042 lncRNA downstream 91940 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058041 lncRNA downstream 91940 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058040 lncRNA downstream 91940 6177586 ~ 6252483 (-) True XLOC_028488
TCONS_00058039 lncRNA downstream 91948 6177586 ~ 6252475 (-) False XLOC_028488
TCONS_00057320 lncRNA downstream 227753 6113441 ~ 6116670 (-) True XLOC_028487
TCONS_00058043 lncRNA upstream 160622 6576777 ~ 6580442 (-) False XLOC_028491
TCONS_00058044 lncRNA upstream 160622 6576777 ~ 6580547 (-) False XLOC_028491
TCONS_00058045 lncRNA upstream 162463 6578618 ~ 6580266 (-) True XLOC_028491
TCONS_00055298 lncRNA upstream 388943 6805098 ~ 6805921 (-) True XLOC_028492
TCONS_00058046 lncRNA upstream 604295 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00055284 mRNA downstream 431085 5906958 ~ 5913338 (-) False XLOC_028486
TCONS_00055285 mRNA downstream 431472 5911341 ~ 5912951 (-) True XLOC_028486
TCONS_00055283 mRNA downstream 480517 5850317 ~ 5863906 (-) True XLOC_028485
TCONS_00055282 mRNA downstream 488223 5850225 ~ 5856200 (-) False XLOC_028485
TCONS_00055281 mRNA downstream 513387 5827140 ~ 5831036 (-) True XLOC_028484
TCONS_00055290 mRNA upstream 6886 6423041 ~ 6567503 (-) False XLOC_028490
TCONS_00055291 mRNA upstream 7197 6423352 ~ 6623645 (-) False XLOC_028490
TCONS_00055292 mRNA upstream 7265 6423420 ~ 6567355 (-) False XLOC_028490
TCONS_00055294 mRNA upstream 35001 6451156 ~ 6459863 (-) False XLOC_028490
TCONS_00055296 mRNA upstream 383639 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055263 other downstream 972801 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 1411899 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 1773618 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1847632 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 3658333 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 20609 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 149498 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 769040 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 805925 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 1263824 7679979 ~ 7680095 (-) True XLOC_028504

Expression Profile

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