RNA id: TCONS_00055291


Basic Information

Item Value
RNA id TCONS_00055291
length 2379
RNA type mRNA
GC content 0.54
exon number 19
gene id XLOC_028490
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6423041 ~ 6623645 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATAAACTTTTCCACAGAGCTCTGAGCACCTTGAAGGTCCTGGGATGCATTTTGAAAACTCCTGCATTAAGATTCTCTCATACTTGGACTCGCCTCTCCCAAACAAACACGGACATCAACCGAAAGTTTCCCCTCAGGGATGAGACCTGGTATGGCCGTTGTTCACAGCGCAGCAGGAGTACTCTGAAACCAAGGCAAAAGTGGTATTAAGTCATGATGCAGGAGTCGGCCAATGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCAGCCTAAGCAGCCAATTAGATGCTGGCAGTAGAGATGGAAGATCAAGTGGGGAGACGAGCAGTGAAGTAAGCGCAGTCGAGCTGCTGCATCTGCAACAACAGCAGGCCCTACAAGCAGCAAGGCAATTACTCCTACAGCAACCAGGCAGTGGCCTGAAATCTCCAAAGAACAACGACAAACAGCGTCCGTTGCAGGTGCCAGTATCTGTGGCAATGATGAGTCCACAGGTGATCACACCCCAACAGATGCAGCAGATCCTTCAACAGCAAGTCCTTTCCCCCCAGCAGCTCCAAGCCCTCTTACAACAACAACAGGCAGTCATGCTTCAGCagCAACACCTGCAGGAGTTTTATAAGAAACAACAGGAACAACTTCATCTACAGCTTTTGCAGCAACAGCACCCAGGCAAACAAGCAAAAGAGcaacagcagcagcagcagcagttggCGGCACAGCAGCTGGTCTTTCAGCAGCAGCTCTTGCAAATGCAGCaactgcagcagcagcagcacctgCTCAACATGCAGAGGCAGGGCCTCCTCTCTATGCCCCCCGGCCCAGGACAGCCCACCCTCCCCGGACAGACTCTGCCGCCAGCTGGTCTGAGCCCTGCTGAACTCCAGCAACTTTGGAAAGACGTCACTGCGAGCCACACCATGGAGGATAATGGGATGAAACACAGCGGCCTGGACCTGAGCACCAACAACAACACGTCCACTACCTCCACCAGCAACCCCAAAGCTTCTCCACCCATCACTCATCACAGCATGTCCAACGGCCAGTCCCCAGCCCTCAACAACAACCGGAGAGAGAGCTCATTGCATGAAGAGACCGCAGTGTCACACTCCCTCTATGGCCACGGAGTGTGCAAGTGGCCAGGATGTGAAAGTATTTGCGATGACTTTGGACAGTTTTTGAAGCACCTTAACAATGAACACGCACTGGATGACAGGAGTACTGCGCAGTGCCGAGTACAGATGCAGGTGGTACAACAGCTAGAGATACAGCTTTCTAAAGAACGCGAGCGTCTTCAGGCGATGATGGCACACTTGCACATGAGGCCCTCAGAGCCCAAACCATCACCAAAACCGTTGAATCTGGTCTCCAGTGTCACCATGTCAAAGAACCTCCCGTCCATCTCACCCCCAAATTTACCTCAGACGCCAACCACGCCCACTGCTCCAGTCACACCTCTTTCCCAGATGCCCCAGGTGCCCAACGTTCTCAGTCCCGCCAATGTGCCCAGCATGGGTGCCATGCGTAGACGCCACACCGACAAATACTCCATGGCCTTGTCCTCAGAAATCGCCCCAAACTACGAGTTTTACAAGAACGCCGACGTCAGGCCGCCGTTTACTTATGCAACCCTCATCAGGCAGGCTATCATGGAGTCAAGTGACATGCAGCTAACGCTCAACGAAATCTACAGCTGGTTCACGCGCACCTTCGCCTACTTCCGACGCAACGCCGCCACCTGGAAGAACGCAGTGCGACACAACCTCAGCCTGCACAAGTGTTTCGTCCGAGTAGAGAACGTGAAGGGCGCCGTATGGACCGTGGACGAGATGGAATACCAGAAACGCAGGTCACAGAAGATTAcaggGAGCCCGACGCTGGTCAAAAACCTGCCGTCCAGTCTGGGTTATGGGGCAGCTCTTAACGCCAGCTTACAGGCTGCGTTGGCGGAGACCACTTTGCCGCTTCTGGGTAATCCGGGCTTGATGAACAGCGCGTCAGCTATGATGGGAGCAAGTCCTCCAGTAATGATGAGCGGCAGCCCGACCGGACTCTTACAGGGAACCACGCATGAAGAACTCAACGGCACACTAGACCACCTGGACACCAATGGACACAGCAGTCCTGGATACTCCCCACACACCCACCTGCCTCCCATTCACGTCAAGGAGGAGCCACTGAACATGGAGGACGAGGACTGTCCGATGTCACTGGTGaccacagccaatcacagtcctgAACTGGATGATGACAGGGAGCTTGAGGAGGGCAACCTATCGGAGGATCTGGAATGACTATTTTGCCCCACCCCTCCGCTGGGGCTCTGCCCCTTTCAGGCCCCGCCCCTTAACTAAACCACAAACG

Function

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041203-2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to ethanol. Predicted to be active in nucleus. Is expressed in head; heart tube; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2).

Ensembl:

ensembl_id ENSDART00000060861

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055289 lncRNA downstream 7180 6411080 ~ 6416172 (-) True XLOC_028489
TCONS_00058042 lncRNA downstream 170869 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058041 lncRNA downstream 170869 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058040 lncRNA downstream 170869 6177586 ~ 6252483 (-) True XLOC_028488
TCONS_00058039 lncRNA downstream 170877 6177586 ~ 6252475 (-) False XLOC_028488
TCONS_00055298 lncRNA upstream 181453 6805098 ~ 6805921 (-) True XLOC_028492
TCONS_00058046 lncRNA upstream 396805 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057322 lncRNA upstream 397084 7020729 ~ 7023525 (-) False XLOC_028493
TCONS_00057321 lncRNA upstream 397084 7020729 ~ 7023525 (-) True XLOC_028493
TCONS_00058047 lncRNA upstream 914370 7538015 ~ 7546103 (-) False XLOC_028498
TCONS_00055288 mRNA downstream 6938 6344452 ~ 6416414 (-) False XLOC_028489
TCONS_00055287 mRNA downstream 7197 6344423 ~ 6416155 (-) False XLOC_028489
TCONS_00055286 mRNA downstream 49617 6339572 ~ 6373735 (-) False XLOC_028489
TCONS_00055284 mRNA downstream 510014 5906958 ~ 5913338 (-) False XLOC_028486
TCONS_00055296 mRNA upstream 176149 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055297 mRNA upstream 181393 6805038 ~ 6806632 (-) False XLOC_028492
TCONS_00055300 mRNA upstream 587110 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055302 mRNA upstream 605591 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055304 mRNA upstream 1029962 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055263 other downstream 1051730 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 1490828 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 1852547 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1926561 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 3737262 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055299 other upstream 561550 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 598435 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 1056334 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 1247020 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 1247091 7870736 ~ 7875760 (-) False XLOC_028507

Expression Profile

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