RNA id: TCONS_00058044


Basic Information

Item Value
RNA id TCONS_00058044
length 2916
lncRNA type read_through
GC content 0.43
exon number 2
gene id XLOC_028491
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6576777 ~ 6580547 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTGTCTTTGACACCATAAGGGTTTCTGTTGTTCTATCATTTTATTATATCACAAAATGGGATTAACATTTGGTATAATAATACCAGAGTTAGTTTAGCATTGCATTGAAAGACTGATTGCTTGGGATCAAATAGGACTTTTAATGAGAATACAAGTGAAAGCAACAAAAACAGAAATGCCTCTTAAATCTATTTTCCAAGTTATTTTGGGCCCATAGAATCACGTCATGccactttacattttaaaaccataCATCATAtttgtgaaaaaagttttttttttaaaaacatcctaCAGTATATTGTCTCAGTCCACATCAACAGACGCCCCATCCAGACGCTGTTTCATGCCCTGGCTGCACCACCAGCACAGAGAAAACAAATAGAGAGCCAAGCAGGTTGGCATGTCACAAAGATATGTTGTTATGAAGATCACAAACAGAATAGCATACAGTAAAGCCTTGGCCATGTGACCCAGTGAGTTGAACTCCTGCCACCATGAAAACAGCCTGTTGCTACTACCATTGAGGCTTTTCccaagctcaaactcttcatctTGAGAATTGACCTCTCTGTCCTTTATAGATGTTGTCTGAGGGATGTGTTTGGGAAGGTCAGTGCTATCTGTCAGATATGTAACTTTGCTGGTAAGGTCTTCATCTGTGCAATTATCACCGATGGCTCGGGAGTCCTCAATGAGCTCTCGTTTGCTTTCTGAACACATTTCATCCTCTTCACCTCCTTTAGCTGCTTCAATAGTCGTCTCGTTGAGTTGCTCCTTTATTTTAAGTCCTTCATTTGCCTCAAACCGCCTCTCTTCGCTTTTCTGTAGCTCTGAATTGTCTTTGTGAAGATTCTTGTTCATCGTGCATAATTCGTTCTCATTAAACGCCTCGCTCGCGCACGATGAAACACTCTGTATTTCTGCACTGTGATCCATAGTTGTTTCATCTTGTCCTTTTCTACTGCTTTCCGCGTCCTCTTCATGTAGTTCTGTATAAAACCACCTCATTTCCACCTGCTCCTCGCTATCGTCTATATTTATAACCTTCCTCTTTGGAGAAGATCCCTCGGCCTGTCTATTTGTGAGTGGCACGTCTCTGATCCCCGTAAATGTCAGGATGTCTTTGACCGccctgtgtgtgttttctttaacCTTTGAGGTGTCGGAGCTGCCCGTGCATTCTTCAGGTGAGATTCCATCTCCTGCTTCTGAATTCTgagtctctgtgtcatgcgcgaTTCCAGTTTCATCCCCTGGGCTCGCCTTGGTCGTGTCTTGACTCAAAAATCCACTTGTGAGCTCATGATGTGGCGTTTGGCAGTCACGAGATGCCTCTAACTCTCTTTCCAGCCTGTCTGGCTCTGATCCCAGAACAGAGCATGGTACTGTAGTGACCCTTGGTTCTTTAACTAACTGGTAATCTACAACTCGATCACTAGAAAGACCTGTGCTCAGATCCTTTCCTTGCTCTGTGGGATCAGATGTTATGATTTCTATTGCTCCCCTGTCAGCAGACCATTGACTACATTTTTTCTCAGCTTCTCTATCCTCCATTGGGACTTCAATTTGTTCCCTTGAAGCTAAAACTGAGCATGGTACGATAGTGACGCTTGGTTCTTTTACTAACTGATGATCCACAACTTCATAACTCGAAAGACTCAAGCTCAGATCCTTTCTTTGGTCTGTGGGATCAGATTTTATACTTTCTATTGCTCTCTTGTCATCAGACCATTGACTATTATCTTTCTTAGCTCCTCTATCCTCTATTGGGATCATATTTTTGTCCCTTGAAGCTAAAACAGAGCAGGGTATGGCAGTGACACTTGGTTCTTTCGCTAACTGGTAATCCTCAACAACTTGATCACTCGAAAGACCTGTGCTCAGATTCTTTCCTTGCTCCGTGGGATCAGATTTTATGGTTTCTATTGCTCTCCTGTCAGCAGACCCTTGAATGTAGCCTTTTTCAGCTTCTCTATCCTCCATCGGGACTACAATTTGGTCCCTTGAAGGTAAAACAGAGCAGGGTACGGTAGTGATGCTTGGTTCTTTTGCTAACTGATAATCCACAACTTGATCACTAGAGAGACTCGTACTCAGATCTTTTACTTGCACTGTGGGGTCAGATTTTATGGTTTCTATTGCTCCTCTGTCATCAGTCCCTTGACTATAATCTTTCTCCGCTCCTCTATCTTCCATTGGGACTACAATTTGGTCCCTTGAATCTAAAACAGACCATGGTAGAGTAGTGACCATTGGTTCTTTTACTAACTGGTAATTCACAACTTGATCACTAGAAAGACTTGTGATCGGATCCTTTCCTTGTTGTGTGGCATCAGATTGGATGATATTTGTTGTTCTCCTCTTAGCAGACTCTTGACTGTAATTTTTCCAAGCTTCTCTGTCCTCCAATCCTCCGACTCTGTCCCTTGAAGCTGAAACTTCAGAATGGTCAAGTGACTCTGGAGAAGCACATGCCTGATCCTGCATATCACTGTGAGGGATTGCCGTATCAGAGCCCTTCAGAAAGGCATCAAAACTCAACTCAGCTTGGTGATCTTCAACTTGCTGGCTCTCTGTGTTTGGGGGGTTCACTTGGGGAGGTGTTGTTGAGGTACTCCCCCAGTCTAGAGAAAGCAAAGGAATCTGGTGGTACATTAGTATTGGTGGTGTGTCCATGCCGAATCCCTGTTGGTTGTCGGTTCTGCTTTGTATACTCAGCCTTGGGATGGAGGTTGAACTTTCATCTGTGATGGAATTACATCCCATCTGGGTTTCTGTTGCTTTCTGAGCAAAGTAGCTTTGAACATGTGCCAGACGAGCAGCTTGACGCTTCCTACGACGGTCCACCTGTCAGAAATGCGACAATATGctgaataaatatgtttttaaaagaaattgaTCATGTTTTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055289 lncRNA downstream 160605 6411080 ~ 6416172 (-) True XLOC_028489
TCONS_00058042 lncRNA downstream 324294 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058041 lncRNA downstream 324294 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058040 lncRNA downstream 324294 6177586 ~ 6252483 (-) True XLOC_028488
TCONS_00058039 lncRNA downstream 324302 6177586 ~ 6252475 (-) False XLOC_028488
TCONS_00055298 lncRNA upstream 224551 6805098 ~ 6805921 (-) True XLOC_028492
TCONS_00058046 lncRNA upstream 439903 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057322 lncRNA upstream 440182 7020729 ~ 7023525 (-) False XLOC_028493
TCONS_00057321 lncRNA upstream 440182 7020729 ~ 7023525 (-) True XLOC_028493
TCONS_00058047 lncRNA upstream 957468 7538015 ~ 7546103 (-) False XLOC_028498
TCONS_00055290 mRNA downstream 9274 6423041 ~ 6567503 (-) False XLOC_028490
TCONS_00055292 mRNA downstream 9422 6423420 ~ 6567355 (-) False XLOC_028490
TCONS_00055294 mRNA downstream 116914 6451156 ~ 6459863 (-) False XLOC_028490
TCONS_00055288 mRNA downstream 160363 6344452 ~ 6416414 (-) False XLOC_028489
TCONS_00055287 mRNA downstream 160622 6344423 ~ 6416155 (-) False XLOC_028489
TCONS_00055296 mRNA upstream 219247 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055297 mRNA upstream 224491 6805038 ~ 6806632 (-) False XLOC_028492
TCONS_00055300 mRNA upstream 630208 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055302 mRNA upstream 648689 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055304 mRNA upstream 1073060 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055295 other downstream 9511 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 125045 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055263 other downstream 1205155 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 1644253 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 2005972 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055299 other upstream 604648 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 641533 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 1099432 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 1290118 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 1290189 7870736 ~ 7875760 (-) False XLOC_028507