RNA id: TCONS_00055298


Basic Information

Item Value
RNA id TCONS_00055298
length 737
lncRNA type retained_intron
GC content 0.34
exon number 2
gene id XLOC_028492
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 6799794 ~ 6809323 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACTATATTGTCTtcactgtataaataatttaataatatttgaaatCCATCTCAATTAGGATTCAATAAAATTATATCTGTCTGAATGCTTTGAACTCCTTTTCCACTATCAACCAAGACTGCGTGTTATGGAGTATAATTTTAccagatttaattatttatgtagaaAGATTTAATCATTTTAGATGCATTCGGATGATTCTATTGGATGCAGTTATTGAGTTtggattaaatataataaaccagTCACaagcattaataaatacaaaatataaaaccgCACCGCATACTTCacatttattaaagttacaaatatgTCTTATTCCTGAATGCTTTAAAGTCACCTTAAATGCTCACCCAGTCACACTCAAAGTTACGTTTTGGTAACATTTATGGTTGATTTTTACAATGACTTAAATCAAGAGTGTTTTGAAAGCTATACGAGTTTAATCCCTGTTCAACATTTTAGATTCTGCATTGTAATTATTGGATGAGCACAtggtgatattgatgctgaaacgatgtattGAGCAGCTCTATATTTTCTAAGATAAATTCTACATGTCTGATTTCTCCATCTGTATTTGACAGCTGGTGAAACTGAAGAGATGGCTGAAGAGGACTTCCAGTACAAGCTGAAGGTGTACATCGACAGCACGGTGGATAAAAGTGCCAAGACCAGACAAGGTGCCCTTGATGGACTAAAGACTgccatggcaaccaaaatcctcTACG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6132 Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1).

Ensembl:

ensembl_id ENSDART00000150688

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058044 lncRNA downstream 224551 6576777 ~ 6580547 (-) False XLOC_028491
TCONS_00058043 lncRNA downstream 224656 6576777 ~ 6580442 (-) False XLOC_028491
TCONS_00058045 lncRNA downstream 224832 6578618 ~ 6580266 (-) True XLOC_028491
TCONS_00055289 lncRNA downstream 388926 6411080 ~ 6416172 (-) True XLOC_028489
TCONS_00058042 lncRNA downstream 552615 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058046 lncRNA upstream 214529 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057322 lncRNA upstream 214808 7020729 ~ 7023525 (-) False XLOC_028493
TCONS_00057321 lncRNA upstream 214808 7020729 ~ 7023525 (-) True XLOC_028493
TCONS_00058047 lncRNA upstream 732094 7538015 ~ 7546103 (-) False XLOC_028498
TCONS_00058048 lncRNA upstream 732094 7538015 ~ 7546117 (-) True XLOC_028498
TCONS_00055291 mRNA downstream 181453 6423352 ~ 6623645 (-) False XLOC_028490
TCONS_00055290 mRNA downstream 237595 6423041 ~ 6567503 (-) False XLOC_028490
TCONS_00055292 mRNA downstream 237743 6423420 ~ 6567355 (-) False XLOC_028490
TCONS_00055294 mRNA downstream 345235 6451156 ~ 6459863 (-) False XLOC_028490
TCONS_00055288 mRNA downstream 388684 6344452 ~ 6416414 (-) False XLOC_028489
TCONS_00055300 mRNA upstream 404834 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055302 mRNA upstream 423315 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055304 mRNA upstream 847686 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055307 mRNA upstream 912933 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055308 mRNA upstream 1045208 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055295 other downstream 237832 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 353366 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055263 other downstream 1433476 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 1872574 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 2234293 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055299 other upstream 379274 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 416159 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 874058 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 1064744 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 1064815 7870736 ~ 7875760 (-) False XLOC_028507

Expression Profile

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