RNA id: TCONS_00055301


Basic Information

Item Value
RNA id TCONS_00055301
length 288
RNA type processed_transcript
GC content 0.52
exon number 1
gene id XLOC_028496
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7222080 ~ 7222367 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGAGCGGCTGCAGATGCGCCTCTGAACGCGGAGGAAGGAGGAGGTTGTCAGTGCGAGGGACTCTTAAATAGCTTCCCGACGGCTCTCACCTGCTGGATTTTGCCTCATTCGCAGGGCAAAACCTAAATTTTTGGAGCAGCATCCGTGATTCTTTATACATCTGCGTTGGAGGAAGAAGAACACGCGTGCGTATTTTCGTTTGCGTGGCGCGCGCTTTCCGGAGCACTGCGCTATAGATGAACGGAATACATGTCGCTTTATCGCTCGGAATGACTTGCGTTGAAACG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166716

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058046 lncRNA downstream 197783 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057322 lncRNA downstream 198555 7020729 ~ 7023525 (-) False XLOC_028493
TCONS_00057321 lncRNA downstream 198555 7020729 ~ 7023525 (-) True XLOC_028493
TCONS_00055298 lncRNA downstream 416159 6805098 ~ 6805921 (-) True XLOC_028492
TCONS_00058044 lncRNA downstream 641533 6576777 ~ 6580547 (-) False XLOC_028491
TCONS_00058047 lncRNA upstream 315648 7538015 ~ 7546103 (-) False XLOC_028498
TCONS_00058048 lncRNA upstream 315648 7538015 ~ 7546117 (-) True XLOC_028498
TCONS_00057323 lncRNA upstream 335047 7557414 ~ 7566507 (-) True XLOC_028499
TCONS_00057324 lncRNA upstream 356494 7578861 ~ 7581433 (-) True XLOC_028500
TCONS_00057325 lncRNA upstream 375843 7598210 ~ 7631260 (-) False XLOC_028501
TCONS_00055300 mRNA downstream 9205 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055296 mRNA downstream 412757 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055297 mRNA downstream 415448 6805038 ~ 6806632 (-) False XLOC_028492
TCONS_00055291 mRNA downstream 598435 6423352 ~ 6623645 (-) False XLOC_028490
TCONS_00055290 mRNA downstream 654577 6423041 ~ 6567503 (-) False XLOC_028490
TCONS_00055302 mRNA upstream 6869 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055304 mRNA upstream 431240 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055307 mRNA upstream 496487 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055308 mRNA upstream 628762 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055309 mRNA upstream 648017 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055299 other downstream 36769 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 654814 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 770348 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055263 other downstream 1850458 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 2289556 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055306 other upstream 457612 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 648298 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 648369 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055313 other upstream 648528 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055327 other upstream 918982 8141349 ~ 8141466 (-) True XLOC_028515

Expression Profile

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