RNA id: TCONS_00055302


Basic Information

Item Value
RNA id TCONS_00055302
length 1011
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_028497
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7229236 ~ 7231480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGGCAACAAAGGATTAAATATAAAATGGGAAATTATCGAGCCAAATTAAGAGGTAGCCAGCTTTCTTGCCCAGAGCTTGAGGTGAACCAGAAAAGGAAGACAAATGAAAACCCTACTCCAAAAGGCTTCAAAAGACCTAGGAAGGCTGAAGTAAATTACTTGCCACCATTTCCATTTGGGGAAACAGGAGAAAGTTTGGAGAAGGAGAGACTAGATCTCCTTAATGAAATTAggaagaaaaacaacaaaaacatcattGGCGAGAAAATGGAGAAGACTTTCTCCTATCGAAGAACAGAAGTAGTTAAGGACTGCCCTGCTGTTAAAGATTTCATGGAGAGATGGCCAGCCCTTTTCTGTGAATCTGAGatCAAGAATGAATTTAGAAGAATCACCACAATTTCCTTGGAGCGTACATTCTTGGAAAAGCTGGACTTCTATACTCCAAAACTCCTGGCTTTGTTTGAGATGAAGGGTGGGGTTGCTGGCATAAGAATTAGACATTTGCTGGATTCACTCAGCCagCAAGAAGATAGGCTTGAAGATAGGCGAGACGTTGTGATTCGCTGCCTCCTGTCTTTCCTTGGAGAATCAGCTGAGGAGCTCATTGAAGACCACCAGGATGTCAGCAGAGACATGATTAAGGATACCTTCGCCAGTCATGTCATGAAAATCATCGTCCTGAGCAGATCTGTAGAAGAGGAAGATGCCAGTAGATCTGATGTCATCATTGTCATCGAGGGAACTGAGGTGCTGCTGGGATGTAAAAATCTCACAAATGCATGTCTTTCACTCATGGGCTGCATTTACTCCCTAAACCTAAGCTATCCCCCAAAGCTGAGAAACACATTTGAAGTGTTTCAGAAAATCTTTCTTGGCCTAGATGCTTTAAAATTCTCTCCAAAGGTTAACTCTTTGCATAGAAAGCTTCTAATGTAATCTGCTAGTTGAGCACTACTTGCACTTATTTACACTACTTATgctgttttactgttttttttttttgttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000159436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058046 lncRNA downstream 204939 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057322 lncRNA downstream 205711 7020729 ~ 7023525 (-) False XLOC_028493
TCONS_00057321 lncRNA downstream 205711 7020729 ~ 7023525 (-) True XLOC_028493
TCONS_00055298 lncRNA downstream 423315 6805098 ~ 6805921 (-) True XLOC_028492
TCONS_00058044 lncRNA downstream 648689 6576777 ~ 6580547 (-) False XLOC_028491
TCONS_00058047 lncRNA upstream 306535 7538015 ~ 7546103 (-) False XLOC_028498
TCONS_00058048 lncRNA upstream 306535 7538015 ~ 7546117 (-) True XLOC_028498
TCONS_00057323 lncRNA upstream 325934 7557414 ~ 7566507 (-) True XLOC_028499
TCONS_00057324 lncRNA upstream 347381 7578861 ~ 7581433 (-) True XLOC_028500
TCONS_00057325 lncRNA upstream 366730 7598210 ~ 7631260 (-) False XLOC_028501
TCONS_00055300 mRNA downstream 16361 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055296 mRNA downstream 419913 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055297 mRNA downstream 422604 6805038 ~ 6806632 (-) False XLOC_028492
TCONS_00055291 mRNA downstream 605591 6423352 ~ 6623645 (-) False XLOC_028490
TCONS_00055290 mRNA downstream 661733 6423041 ~ 6567503 (-) False XLOC_028490
TCONS_00055304 mRNA upstream 422127 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055307 mRNA upstream 487374 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055308 mRNA upstream 619649 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055309 mRNA upstream 638904 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055312 mRNA upstream 639348 7870828 ~ 7875808 (-) False XLOC_028507
TCONS_00055301 other downstream 6869 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055299 other downstream 43925 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 661970 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 777504 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055263 other downstream 1857614 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055306 other upstream 448499 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 639185 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 639256 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055313 other upstream 639415 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055327 other upstream 909869 8141349 ~ 8141466 (-) True XLOC_028515

Expression Profile

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