RNA id: TCONS_00058048


Basic Information

Item Value
RNA id TCONS_00058048
length 772
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_028498
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7538015 ~ 7546117 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCAGTGTTGCTCATTTCACCCAACAGAAATTCTCTTTAAGCTTAAAGTTACTTACCGGTGGTGCTTGACAGCTGCATTGTCTTTGCATCCACTGCATGTTATGAGTGATTTTGATAGCTGTCATTTGCAGGAACTGTATTAAAAACAATCTGCACGTGTTGTTGCGTCTGTCATCGAGccccatgttgttgttgttgttgttgttgttgtcattgaaACCCTCTTCCCCCGTCTAGTGGAGCGGAGACAAAACTGAGCCTGTTTGCTGCCCTCCTGTGTTGAATTATTTGAATTACACTGCCGATGTTTTTCCATTGACTGATATGGAGGATCTTTTCAGATCGCCATCATGTGCCAGACCTGATTGAAAGCAGGGGAAAGTGACCAGTGTGGCTCAGGGTACTTACCTCTGGTGGTCTCGGACTCGAGCCAGAAGCTGAGTGATCTGTAAAGGGACACATACGGAAGCCTTGCTAAGCACAAATATCAATATGAGCAGGACGGGGGGAAACCTGAGGGGCGCAGACGTCCATCGCCTGATTTACAGTCTCCTGCTTCAGCTGCAGGCGTCCAGAGCCCAGACCCGACACAAATCTGACCAACAACAGGTACTGACAGCAAGGCTACACAACAGTTACTTACAACTTCTGTTGTTCATTGATTCGGGTCTGGAGAACATTCATCTGGAAGCAAGTCACAGTTTTAGACAGGCAGGCCATGGACCAGGCCTGTTTTCAGTGGGAATTATTCTATGGGCTCAATATGAAACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058046 lncRNA downstream 513718 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057322 lncRNA downstream 514490 7020729 ~ 7023525 (-) False XLOC_028493
TCONS_00057321 lncRNA downstream 514490 7020729 ~ 7023525 (-) True XLOC_028493
TCONS_00055298 lncRNA downstream 732094 6805098 ~ 6805921 (-) True XLOC_028492
TCONS_00058044 lncRNA downstream 957468 6576777 ~ 6580547 (-) False XLOC_028491
TCONS_00057323 lncRNA upstream 11297 7557414 ~ 7566507 (-) True XLOC_028499
TCONS_00057324 lncRNA upstream 32744 7578861 ~ 7581433 (-) True XLOC_028500
TCONS_00057325 lncRNA upstream 52093 7598210 ~ 7631260 (-) False XLOC_028501
TCONS_00058049 lncRNA upstream 52283 7598400 ~ 7602265 (-) False XLOC_028501
TCONS_00058050 lncRNA upstream 52283 7598400 ~ 7653189 (-) False XLOC_028501
TCONS_00055302 mRNA downstream 306535 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055300 mRNA downstream 325140 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055296 mRNA downstream 728692 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055297 mRNA downstream 731383 6805038 ~ 6806632 (-) False XLOC_028492
TCONS_00055294 mRNA downstream 1078152 6451156 ~ 6459863 (-) False XLOC_028490
TCONS_00055304 mRNA upstream 107490 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055307 mRNA upstream 172737 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055308 mRNA upstream 305012 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055309 mRNA upstream 324267 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055312 mRNA upstream 324711 7870828 ~ 7875808 (-) False XLOC_028507
TCONS_00055301 other downstream 315648 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055299 other downstream 352704 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 970749 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 1086283 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055263 other downstream 2166393 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055306 other upstream 133862 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 324548 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 324619 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055313 other upstream 324778 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055327 other upstream 595232 8141349 ~ 8141466 (-) True XLOC_028515

Expression Profile

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