RNA id: TCONS_00057323


Basic Information

Item Value
RNA id TCONS_00057323
length 1112
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_028499
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7557414 ~ 7566507 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACgctgcactcaatggagctagttaCGTCattgtgaggggtggggttaggggtgCGCTTTAAAGCGCAGATCCCATTCGCTCCACTAGGCGGAATCAGCGAGCTGCTCTTTTAGCCTGAACACCTTTGACAACAGCAACACCAGATCAGCACAGGTACACCGTTTTACTGGCGTCAAGTTGAGCTCCAGTAGCAGATGACAGCTCAGTGACAGACTCAtaatgtcagtcaacagcagatATTACAGCCCGACAGCGAAGAAAAGCCACACCAAGTGCAGAAATGGAGAGTAACGCGACTCACCTGTAAGGGACTTTGCTTCGTTGGTTTAGTTTGTAGTGATGTTGTtgtagtgtttgtgttcagtcattgctctctctctctctctcctctgcagcagtgaagatacacacgtgtgtctgttgtgtttctgcTGCAGATATTTGAGCTGCGCTCAACAGCTGACGCTCCTCCACacgctcctccacatccaggcggattcacagctccaggaaagCTCACACACAGGTCAGCAGTCCAACATCAGTTCCAGCAAGTGTTCAGACATGGAGATCTGTGGCTATGTGGTAAGAGCACTGCCCCATGGCTTcaggggttgctggttcaaggccagccagaactctgcgatatgagtgaatgGAGAGATTTTCTGTCTTACTGTAAGGCAGGGAGATCCACCAGCGAACTCAATGCCAGTGTGAAGCCCTCCTGCCGCAGAACCACAAACTATCTccagtaaattattttaatttcattgaaTCTGCGGCTCAGAGTCTTCTCTTGATCTGACACAGCAGTCGTTTTGGTCTCAACTGTTCATTTCCCTCCTAACAAtgtcaaaataattattaaagcaTATACTCAATCATCTAATCATTCATGGGTCATTATTTGTGCTCACTTTATATTGAACTTCAGCACAAATGCTTGATTAACAATGTGGAAATATCAAACCAATACGAATGTAATGTGAAACCTGAATATTAGCCTGTAGGTAATTAATGCGCCACTCATCAATAAAGACACATAGAACTTGTTTGACGAGCTCTTATATTGGGGATGCAGAATGTCTTCATTGCTTACAGATTTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058048 lncRNA downstream 11297 7538015 ~ 7546117 (-) True XLOC_028498
TCONS_00058047 lncRNA downstream 11311 7538015 ~ 7546103 (-) False XLOC_028498
TCONS_00058046 lncRNA downstream 533117 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057322 lncRNA downstream 533889 7020729 ~ 7023525 (-) False XLOC_028493
TCONS_00057321 lncRNA downstream 533889 7020729 ~ 7023525 (-) True XLOC_028493
TCONS_00057324 lncRNA upstream 12354 7578861 ~ 7581433 (-) True XLOC_028500
TCONS_00057325 lncRNA upstream 31703 7598210 ~ 7631260 (-) False XLOC_028501
TCONS_00058049 lncRNA upstream 31893 7598400 ~ 7602265 (-) False XLOC_028501
TCONS_00058050 lncRNA upstream 31893 7598400 ~ 7653189 (-) False XLOC_028501
TCONS_00058051 lncRNA upstream 41149 7607656 ~ 7653121 (-) False XLOC_028501
TCONS_00055302 mRNA downstream 325934 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055300 mRNA downstream 344539 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055296 mRNA downstream 748091 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055297 mRNA downstream 750782 6805038 ~ 6806632 (-) False XLOC_028492
TCONS_00055294 mRNA downstream 1097551 6451156 ~ 6459863 (-) False XLOC_028490
TCONS_00055304 mRNA upstream 87100 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055307 mRNA upstream 152347 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055308 mRNA upstream 284622 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055309 mRNA upstream 303877 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055312 mRNA upstream 304321 7870828 ~ 7875808 (-) False XLOC_028507
TCONS_00055301 other downstream 335047 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055299 other downstream 372103 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 990148 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 1105682 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055263 other downstream 2185792 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055306 other upstream 113472 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 304158 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 304229 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055313 other upstream 304388 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055327 other upstream 574842 8141349 ~ 8141466 (-) True XLOC_028515

Expression Profile

//