RNA id: TCONS_00057324


Basic Information

Item Value
RNA id TCONS_00057324
length 998
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_028500
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7578861 ~ 7581433 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taatgataattatttgATATTTCTACACTGTCAATCAAAAATATGCCCTGAAActctaaataaagtgagaaaatTAATCACTTATGAATGATTAGATGTTTGAGTAtatgctttaaacattaaaaattagttaaacaGACAGACATGTAGCAAAACTGTGCTCACGATGATCTGAGTTTAGTTCCTGCCTCTCTGCCGATCctgatttaaatagtatttatttattcagcgaGCTGCTCTTTTAGCCTGAACACCTTTGACAACAGCGACACCAGATCAGCACAGGTACACCGTTTTACTGGCGTCAAGTTGAGCTCCAGCAGATGACAGCTCAGTGACAGACTCAtaatgtcagtcaacagcagatATTACAGCCCGACAGCGAAGAAAAGCCACACCAAGTGCAGAAATGGAGAGTAACGAGACTCACCTGTAAGGGACTTTGCTTCGTTGGTTTAGTTTGTAGTGATGTTGTtgtagtgtttgtgttcagtcattgctctctctctctctctctcctctgcagcagtgaagatacacacgtgtgtctgttgtgtttctgcTGCAGATCTTTGAGCTGCGCTCAACAGCTGACGCTCCTCCACacgctcctccacatccaggcggattcacagctccaggaaagCTCACACACAGGTCAGCAGTCCAACATCAGTTCCAGCAAGTGTTCAGACATGGAGATCTGTGGCTCTGTGGTAAGAGCGCTGCCCCACGGCTTcaggggttgctggttcaaggccagccagaactctgcgatatgagtgaatggtgagtgagtgtgaggcgcgcctgaagaaggggggataccagttcggtctccccctggagcttccggagccgtgtccagcaggggttatactttacagcctggcaaaaaatttaaaatgaactgtataaaaattctGGACCTTCGTCCCTTCCCCACCCGcttcggttaccatcatttactttgtagaggagtgaccctccacaaagca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0009790 embryo development biological_process
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057323 lncRNA downstream 12354 7557414 ~ 7566507 (-) True XLOC_028499
TCONS_00058048 lncRNA downstream 32744 7538015 ~ 7546117 (-) True XLOC_028498
TCONS_00058047 lncRNA downstream 32758 7538015 ~ 7546103 (-) False XLOC_028498
TCONS_00058046 lncRNA downstream 554564 7020450 ~ 7024297 (-) False XLOC_028493
TCONS_00057325 lncRNA upstream 16777 7598210 ~ 7631260 (-) False XLOC_028501
TCONS_00058049 lncRNA upstream 16967 7598400 ~ 7602265 (-) False XLOC_028501
TCONS_00058050 lncRNA upstream 16967 7598400 ~ 7653189 (-) False XLOC_028501
TCONS_00058051 lncRNA upstream 26223 7607656 ~ 7653121 (-) False XLOC_028501
TCONS_00058052 lncRNA upstream 30435 7611868 ~ 7653008 (-) False XLOC_028501
TCONS_00055302 mRNA downstream 347381 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055300 mRNA downstream 365986 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055296 mRNA downstream 769538 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055297 mRNA downstream 772229 6805038 ~ 6806632 (-) False XLOC_028492
TCONS_00055294 mRNA downstream 1118998 6451156 ~ 6459863 (-) False XLOC_028490
TCONS_00055304 mRNA upstream 72174 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055307 mRNA upstream 137421 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055308 mRNA upstream 269696 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055309 mRNA upstream 288951 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055312 mRNA upstream 289395 7870828 ~ 7875808 (-) False XLOC_028507
TCONS_00055301 other downstream 356494 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055299 other downstream 393550 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 1011595 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 1127129 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055263 other downstream 2207239 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055306 other upstream 98546 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055310 other upstream 289232 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 289303 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055313 other upstream 289462 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055327 other upstream 559916 8141349 ~ 8141466 (-) True XLOC_028515

Expression Profile

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