Item | Value |
---|---|
RNA id | TCONS_00058055 |
length | 449 |
lncRNA type | inter_gene |
GC content | 0.48 |
exon number | 2 |
gene id | XLOC_028501 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007115.7 |
NCBI id | CM002888.2 |
chromosome length | 78093715 |
location | 7598210 ~ 7653189 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0016072 | rRNA metabolic process | biological_process |
GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
GO:0006364 | rRNA processing | biological_process |
GO:0043603 | cellular amide metabolic process | biological_process |
GO:0043604 | amide biosynthetic process | biological_process |
GO:1901566 | organonitrogen compound biosynthetic process | biological_process |
GO:0009058 | biosynthetic process | biological_process |
GO:0009059 | macromolecule biosynthetic process | biological_process |
GO:0043043 | peptide biosynthetic process | biological_process |
GO:1901576 | organic substance biosynthetic process | biological_process |
GO:0006412 | translation | biological_process |
GO:0010467 | gene expression | biological_process |
GO:0044249 | cellular biosynthetic process | biological_process |
GO:0042254 | ribosome biogenesis | biological_process |
GO:0042255 | ribosome assembly | biological_process |
GO:0000470 | maturation of LSU-rRNA | biological_process |
GO:0044271 | cellular nitrogen compound biosynthetic process | biological_process |
GO:0042273 | ribosomal large subunit biogenesis | biological_process |
GO:0061028 | establishment of endothelial barrier | biological_process |
GO:0006518 | peptide metabolic process | biological_process |
GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
GO:0044391 | ribosomal subunit | cellular_component |
GO:1990904 | ribonucleoprotein complex | cellular_component |
GO:0022625 | cytosolic large ribosomal subunit | cellular_component |
GO:0022626 | cytosolic ribosome | cellular_component |
GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
GO:0044444 | obsolete cytoplasmic part | cellular_component |
GO:0044445 | obsolete cytosolic part | cellular_component |
GO:0044446 | obsolete intracellular organelle part | cellular_component |
GO:0005829 | cytosol | cellular_component |
GO:0005840 | ribosome | cellular_component |
GO:0005854 | nascent polypeptide-associated complex | cellular_component |
GO:0032991 | protein-containing complex | cellular_component |
GO:0015934 | large ribosomal subunit | cellular_component |
GO:0015935 | small ribosomal subunit | cellular_component |
GO:0043228 | non-membrane-bounded organelle | cellular_component |
GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0005198 | structural molecule activity | molecular_function |
GO:0003723 | RNA binding | molecular_function |
GO:0003735 | structural constituent of ribosome | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00058053 | lncRNA | downstream | 1930 | 7615677 ~ 7618015 (-) | False | XLOC_028501 |
TCONS_00058049 | lncRNA | downstream | 17680 | 7598400 ~ 7602265 (-) | False | XLOC_028501 |
TCONS_00057324 | lncRNA | downstream | 38512 | 7578861 ~ 7581433 (-) | True | XLOC_028500 |
TCONS_00057323 | lncRNA | downstream | 53438 | 7557414 ~ 7566507 (-) | True | XLOC_028499 |
TCONS_00058048 | lncRNA | downstream | 73828 | 7538015 ~ 7546117 (-) | True | XLOC_028498 |
TCONS_00055305 | lncRNA | upstream | 13711 | 7666715 ~ 7673123 (-) | True | XLOC_028503 |
TCONS_00055314 | lncRNA | upstream | 219317 | 7872321 ~ 7875551 (-) | True | XLOC_028507 |
TCONS_00058061 | lncRNA | upstream | 318678 | 7971682 ~ 7973335 (-) | True | XLOC_028508 |
TCONS_00058062 | lncRNA | upstream | 560166 | 8213170 ~ 8214435 (-) | True | XLOC_028516 |
TCONS_00057326 | lncRNA | upstream | 566457 | 8219461 ~ 8219991 (-) | True | XLOC_028517 |
TCONS_00055302 | mRNA | downstream | 388465 | 7229236 ~ 7231480 (-) | True | XLOC_028497 |
TCONS_00055300 | mRNA | downstream | 407070 | 7210755 ~ 7212875 (-) | True | XLOC_028495 |
TCONS_00055296 | mRNA | downstream | 810622 | 6799794 ~ 6809323 (-) | False | XLOC_028492 |
TCONS_00055297 | mRNA | downstream | 813313 | 6805038 ~ 6806632 (-) | False | XLOC_028492 |
TCONS_00055294 | mRNA | downstream | 1160082 | 6451156 ~ 6459863 (-) | False | XLOC_028490 |
TCONS_00055304 | mRNA | upstream | 603 | 7653607 ~ 7673165 (-) | False | XLOC_028503 |
TCONS_00055307 | mRNA | upstream | 65850 | 7718854 ~ 7811925 (-) | True | XLOC_028505 |
TCONS_00055308 | mRNA | upstream | 198125 | 7851129 ~ 7869731 (-) | True | XLOC_028506 |
TCONS_00055309 | mRNA | upstream | 217380 | 7870384 ~ 7876005 (-) | False | XLOC_028507 |
TCONS_00055312 | mRNA | upstream | 217824 | 7870828 ~ 7875808 (-) | False | XLOC_028507 |
TCONS_00055301 | other | downstream | 397578 | 7222080 ~ 7222367 (-) | True | XLOC_028496 |
TCONS_00055299 | other | downstream | 434634 | 7185195 ~ 7185311 (-) | True | XLOC_028494 |
TCONS_00055295 | other | downstream | 1052679 | 6565653 ~ 6567266 (-) | True | XLOC_028490 |
TCONS_00055293 | other | downstream | 1168213 | 6436764 ~ 6451732 (-) | False | XLOC_028490 |
TCONS_00055263 | other | downstream | 2248323 | 5370056 ~ 5371622 (-) | True | XLOC_028470 |
TCONS_00055306 | other | upstream | 26975 | 7679979 ~ 7680095 (-) | True | XLOC_028504 |
TCONS_00055310 | other | upstream | 217661 | 7870665 ~ 7875944 (-) | False | XLOC_028507 |
TCONS_00055311 | other | upstream | 217732 | 7870736 ~ 7875760 (-) | False | XLOC_028507 |
TCONS_00055313 | other | upstream | 217891 | 7870895 ~ 7875930 (-) | False | XLOC_028507 |
TCONS_00055327 | other | upstream | 488345 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |