Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058056 |
| length | 3093 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | XLOC_028501 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 7598210 ~ 7653189 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016072 | rRNA metabolic process | biological_process |
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0043603 | cellular amide metabolic process | biological_process |
| GO:0043604 | amide biosynthetic process | biological_process |
| GO:1901566 | organonitrogen compound biosynthetic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:0043043 | peptide biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0042255 | ribosome assembly | biological_process |
| GO:0000470 | maturation of LSU-rRNA | biological_process |
| GO:0044271 | cellular nitrogen compound biosynthetic process | biological_process |
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| GO:0061028 | establishment of endothelial barrier | biological_process |
| GO:0006518 | peptide metabolic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0044391 | ribosomal subunit | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0022625 | cytosolic large ribosomal subunit | cellular_component |
| GO:0022626 | cytosolic ribosome | cellular_component |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0044444 | obsolete cytoplasmic part | cellular_component |
| GO:0044445 | obsolete cytosolic part | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0005854 | nascent polypeptide-associated complex | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0015934 | large ribosomal subunit | cellular_component |
| GO:0015935 | small ribosomal subunit | cellular_component |
| GO:0043228 | non-membrane-bounded organelle | cellular_component |
| GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058053 | lncRNA | downstream | 8063 | 7615677 ~ 7618015 (-) | False | XLOC_028501 |
| TCONS_00058049 | lncRNA | downstream | 23813 | 7598400 ~ 7602265 (-) | False | XLOC_028501 |
| TCONS_00057324 | lncRNA | downstream | 44645 | 7578861 ~ 7581433 (-) | True | XLOC_028500 |
| TCONS_00057323 | lncRNA | downstream | 59571 | 7557414 ~ 7566507 (-) | True | XLOC_028499 |
| TCONS_00058048 | lncRNA | downstream | 79961 | 7538015 ~ 7546117 (-) | True | XLOC_028498 |
| TCONS_00058058 | lncRNA | upstream | 11236 | 7640406 ~ 7652998 (-) | False | XLOC_028501 |
| TCONS_00058059 | lncRNA | upstream | 15931 | 7645101 ~ 7648229 (-) | True | XLOC_028502 |
| TCONS_00055303 | lncRNA | upstream | 20833 | 7650003 ~ 7652981 (-) | False | XLOC_028501 |
| TCONS_00058060 | lncRNA | upstream | 20840 | 7650010 ~ 7653168 (-) | True | XLOC_028501 |
| TCONS_00055305 | lncRNA | upstream | 37545 | 7666715 ~ 7673123 (-) | True | XLOC_028503 |
| TCONS_00055302 | mRNA | downstream | 394598 | 7229236 ~ 7231480 (-) | True | XLOC_028497 |
| TCONS_00055300 | mRNA | downstream | 413203 | 7210755 ~ 7212875 (-) | True | XLOC_028495 |
| TCONS_00055296 | mRNA | downstream | 816755 | 6799794 ~ 6809323 (-) | False | XLOC_028492 |
| TCONS_00055297 | mRNA | downstream | 819446 | 6805038 ~ 6806632 (-) | False | XLOC_028492 |
| TCONS_00055294 | mRNA | downstream | 1166215 | 6451156 ~ 6459863 (-) | False | XLOC_028490 |
| TCONS_00055304 | mRNA | upstream | 24437 | 7653607 ~ 7673165 (-) | False | XLOC_028503 |
| TCONS_00055307 | mRNA | upstream | 89684 | 7718854 ~ 7811925 (-) | True | XLOC_028505 |
| TCONS_00055308 | mRNA | upstream | 221959 | 7851129 ~ 7869731 (-) | True | XLOC_028506 |
| TCONS_00055309 | mRNA | upstream | 241214 | 7870384 ~ 7876005 (-) | False | XLOC_028507 |
| TCONS_00055312 | mRNA | upstream | 241658 | 7870828 ~ 7875808 (-) | False | XLOC_028507 |
| TCONS_00055301 | other | downstream | 403711 | 7222080 ~ 7222367 (-) | True | XLOC_028496 |
| TCONS_00055299 | other | downstream | 440767 | 7185195 ~ 7185311 (-) | True | XLOC_028494 |
| TCONS_00055295 | other | downstream | 1058812 | 6565653 ~ 6567266 (-) | True | XLOC_028490 |
| TCONS_00055293 | other | downstream | 1174346 | 6436764 ~ 6451732 (-) | False | XLOC_028490 |
| TCONS_00055263 | other | downstream | 2254456 | 5370056 ~ 5371622 (-) | True | XLOC_028470 |
| TCONS_00055306 | other | upstream | 50809 | 7679979 ~ 7680095 (-) | True | XLOC_028504 |
| TCONS_00055310 | other | upstream | 241495 | 7870665 ~ 7875944 (-) | False | XLOC_028507 |
| TCONS_00055311 | other | upstream | 241566 | 7870736 ~ 7875760 (-) | False | XLOC_028507 |
| TCONS_00055313 | other | upstream | 241725 | 7870895 ~ 7875930 (-) | False | XLOC_028507 |
| TCONS_00055327 | other | upstream | 512179 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |
