Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055305 |
| length | 607 |
| lncRNA type | retained_intron |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_028503 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 7653607 ~ 7673165 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006954 | inflammatory response | biological_process |
| GO:0009617 | response to bacterium | biological_process |
| GO:0044255 | cellular lipid metabolic process | biological_process |
| GO:0019370 | leukotriene biosynthetic process | biological_process |
| GO:0055113 | epiboly involved in gastrulation with mouth forming second | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0030593 | neutrophil chemotaxis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004463 | leukotriene-A4 hydrolase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0004301 | epoxide hydrolase activity | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2477 | Predicted to enable aminopeptidase activity; epoxide hydrolase activity; and leukotriene-A4 hydrolase activity. Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; neutrophil chemotaxis; and response to bacterium. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in intestinal bulb; macrophage; and neutrophil. Orthologous to human LTA4H (leukotriene A4 hydrolase). |
| ensembl_id | ENSDART00000148973 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058050 | lncRNA | downstream | 13526 | 7598400 ~ 7653189 (-) | False | XLOC_028501 |
| TCONS_00058060 | lncRNA | downstream | 13547 | 7650010 ~ 7653168 (-) | True | XLOC_028501 |
| TCONS_00058051 | lncRNA | downstream | 13594 | 7607656 ~ 7653121 (-) | False | XLOC_028501 |
| TCONS_00058057 | lncRNA | downstream | 13594 | 7626078 ~ 7653121 (-) | False | XLOC_028501 |
| TCONS_00058052 | lncRNA | downstream | 13707 | 7611868 ~ 7653008 (-) | False | XLOC_028501 |
| TCONS_00055314 | lncRNA | upstream | 199198 | 7872321 ~ 7875551 (-) | True | XLOC_028507 |
| TCONS_00058061 | lncRNA | upstream | 298559 | 7971682 ~ 7973335 (-) | True | XLOC_028508 |
| TCONS_00058062 | lncRNA | upstream | 540047 | 8213170 ~ 8214435 (-) | True | XLOC_028516 |
| TCONS_00057326 | lncRNA | upstream | 546338 | 8219461 ~ 8219991 (-) | True | XLOC_028517 |
| TCONS_00055330 | lncRNA | upstream | 961581 | 8634704 ~ 8638629 (-) | True | XLOC_028520 |
| TCONS_00055302 | mRNA | downstream | 435235 | 7229236 ~ 7231480 (-) | True | XLOC_028497 |
| TCONS_00055300 | mRNA | downstream | 453840 | 7210755 ~ 7212875 (-) | True | XLOC_028495 |
| TCONS_00055296 | mRNA | downstream | 857392 | 6799794 ~ 6809323 (-) | False | XLOC_028492 |
| TCONS_00055297 | mRNA | downstream | 860083 | 6805038 ~ 6806632 (-) | False | XLOC_028492 |
| TCONS_00055294 | mRNA | downstream | 1206852 | 6451156 ~ 6459863 (-) | False | XLOC_028490 |
| TCONS_00055307 | mRNA | upstream | 45731 | 7718854 ~ 7811925 (-) | True | XLOC_028505 |
| TCONS_00055308 | mRNA | upstream | 178006 | 7851129 ~ 7869731 (-) | True | XLOC_028506 |
| TCONS_00055309 | mRNA | upstream | 197261 | 7870384 ~ 7876005 (-) | False | XLOC_028507 |
| TCONS_00055312 | mRNA | upstream | 197705 | 7870828 ~ 7875808 (-) | False | XLOC_028507 |
| TCONS_00055315 | mRNA | upstream | 328751 | 8001874 ~ 8014463 (-) | True | XLOC_028509 |
| TCONS_00055301 | other | downstream | 444348 | 7222080 ~ 7222367 (-) | True | XLOC_028496 |
| TCONS_00055299 | other | downstream | 481404 | 7185195 ~ 7185311 (-) | True | XLOC_028494 |
| TCONS_00055295 | other | downstream | 1099449 | 6565653 ~ 6567266 (-) | True | XLOC_028490 |
| TCONS_00055293 | other | downstream | 1214983 | 6436764 ~ 6451732 (-) | False | XLOC_028490 |
| TCONS_00055263 | other | downstream | 2295093 | 5370056 ~ 5371622 (-) | True | XLOC_028470 |
| TCONS_00055306 | other | upstream | 6856 | 7679979 ~ 7680095 (-) | True | XLOC_028504 |
| TCONS_00055310 | other | upstream | 197542 | 7870665 ~ 7875944 (-) | False | XLOC_028507 |
| TCONS_00055311 | other | upstream | 197613 | 7870736 ~ 7875760 (-) | False | XLOC_028507 |
| TCONS_00055313 | other | upstream | 197772 | 7870895 ~ 7875930 (-) | False | XLOC_028507 |
| TCONS_00055327 | other | upstream | 468226 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |
