RNA id: TCONS_00055308


Basic Information

Item Value
RNA id TCONS_00055308
length 2837
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_028506
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7851129 ~ 7869731 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTAAACATTTTGCGCGCCAACATTGAAACAACAGCTGCTACGTCTGGTCTGAGCGGAGACATTTAATCGCTTTCATTTAAACAAGAGAAAATACGGTCAAGTCAAAATGACAGAGGAGGAGAATCTGGACATGCTGCTGTCTTTATTTGCGGAGAGTGAGGGCCAGGATCTGGAGAGTCCTGCTGCGGAGGAGGGTGAAGACAATCTGGACGATCTCTTCGATGAGGATGATGACGGCGAGCAATATATCGAGCCTGAGGAGGCGGAAgaagagaaagaagaagaagaagaagaagtgtcACCTGGGAAGTCCAGCTCATCTGACTTAAATAAGTCAAAAGAAGATCTGGAGGCTGAGCTGAAATTAATGCAGGAGAAAATGCAAAAACTACAACAGCAGCTGGAGGCCtcacagaagaccacaccagctCAAAACAAACCCGCCGTCCAGAGACAAAGCACTAAATCCTTAACTTCACCTCAAGCGGGTGTGAAAACTACCCCACCAACAGTACGAGATAGCGATGGCTCTCCATCAAACATCACGGCAAAGCTGAAAAACAAGCAGAGGACGGCCCACCAACCCAAAGCAGCCTCTTCAGAAAGGCAGATTCCTATTGGTCAGAGTACGAACCAACCTCAGCCGATGAGAGACGGTGCTAAAGTGAACAGCATGTTAAAGTCACCTCCCCTTATCAAGACTCCTCCCACTGTGCGGCAGCCCACGCCACGTCTACCTGTCAATCAAGAGGTGGCCGTGGAGAAGTTTTCTGGTCTCCGACTCAGGAAGCCACGTCTGTCTTCCATAGACATTGAGCAGAAAATGGCCAGCCGCAAACTGATCAGGCTCTCCCAGCTGCCCGATCGACTGGCCAGAGACAATTTAGAGGACAGCGATTGGGTCACGTTTGCCGTGATCATAAATAAGATCACTCCACAGAGCAAAAACAATGGGAAAACCTTCAGCATCTGGAAGCTGAATGATCTCCATAATCTGGAAGTGAATGTGTCTCTCTTTCTGTTCGGGTCTGTTCACACTGACCTGTGGAAGACTGACACCGGGACAGTGATTGGAATCCTCAATCCCAACCCGATGAAGAACAAAGAAGGCTCCAATgagCTCAGCCTGACAGTGGATCACCCACAGAAAGTCCTCATAATAGGAGAAGCCATGGACTTTGGCACCTGCAAGGCTAAAAAGAAGAACGGGGATTCTTGCACTCAACTTGTCAACTTGTATGAATGCCAGTTCTGTCAGTACCATGTTAAAGCCCAATACAAGAAAATGAGCTCCAAGAGGGCGGAGCTTCAGTCCAGCTTTACAGGCTCCGCCCCTGGTAAAGGAAGGGGGCGGGGCAGTTTGAAGGAGCGCCTGTGCCAGTCTGATTTCCACTATGGCGGCATGTCATCACTCGCTTGTGCGCCCTCAATGTCTGCCCCACAGCCAAAGAAACAACCCACTATACAGTCTGCTTTGGCATCCATCCCAACTAAGAAACTCGTTCTGAACTCAGGTCAGGTGTCAGGCTGTTCAGATGATTTCAGAGGTCTGATGTCTATGCCCACGCCTGGAGCACTTAACATCAAGAGACATTTAGGACAATCCAAGAGTTCAGCCGTGGCAGGATCTTCAGTTCAGTCAGTATCTGCCTCTGACCTGCTCAAACAGCAGAAAGAGCAGCACCAGCAGAGGATGATGGCCCGAAAGAAGAGGGCAGAAGAGATTCAGAAGAGGGTGCTTCAGAGTGGCGGAGCTCCTGTCGCTTCATCTCGGCCCAATGTAAGCAGGGGTCCACTGCTTTCCCCGAAAGCAGCTTCAGAGGGTCCTAAAGGCTCTGGGTCCAGTCTCTCAGGGCCCGCTGTGCCCACCCTCGGTCGTGGCTTTTCAGAAGGAGAGGACATTGTTTTTGATATGTCTCCACCTTCATCAAAGAGCCTCTCAGCTACAAAGctggCAGCAGTGAGGAAACTCCAAGCTAAAGGCTCAGTCATCGTTAAAGAAGACCCGAATGCTGTTAAACGCAAGCGAGCAAACAGTGGTGACATCACAGGTCGAGTCGAGCGTAACATCGTCAAAGCCAAAGTAACGGATGAAAATTCAGCCAGCGAGGAGGAGGAGCCAGCGATGAAGAAGAGGCGGGAACAGCTGGAGTACATTCAGTCAGAAGAGTTTCAGCGTATCCTCAACGCCAAGTCATCAAACTCATGGATGAtgggagagATTGAGGAGCGGGCCATGCAGGAGTACTTCGAGCCACTTGTGCAAAAAGAGAAGATGGAGGAGAAGATGAAGAGCATCAGGGAGATGAAATGTCGGGCCGTCACATGTAAAACTTGTAAATACACCCACTTTAAACCAGCGGACCGCTGCGTGGAGGAGAAACACGACTATCACTGGCACGACGCCGTCAAACGCTTCTTCAAATGCCCCTGCGGGCAGAGAAAGATCTGCCTGGCGCGGATGCCACACGGAGCTTGCAGCCATTGTGGCCTTTTCAAGTGGGAAAGAGATGGCATGTTAAAGGAGAAAAAGGGACCCAAAATCGGAGGGGAGCTTCTGATGCCACGTGGAGAAGAACAGCCCAAATTCCTCAACAGTTTAAAGTAGAGTCAGAACCCAAACTCCATCCGGGACCAGTCCAAATGCAGAAGAGCTTTCCATCATGCAAGACTAGTCCTAAAGGAGCCTTCATTTTAGTCTCTCACTGTTTGTTGCCTTTTTATATTCTTTTAAGATaagctgtaataaatgtaaatatgtaatatgATTTTAATTGTGAACTTTTATATCAACTCTGGTCCCCCTGAATTAAACTGAACCTGCTTGAACTTCA

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006260 DNA replication biological_process
GO:0006270 DNA replication initiation biological_process
GO:0031298 replication fork protection complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003688 DNA replication origin binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-041210-42 Predicted to enable DNA replication origin binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA replication initiation. Predicted to act upstream of or within DNA replication and cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of replication fork protection complex. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human MCM10 (minichromosome maintenance 10 replication initiation factor).

Ensembl:

ensembl_id ENSDART00000067339

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055305 lncRNA downstream 178006 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058060 lncRNA downstream 197961 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00058058 lncRNA downstream 198131 7640406 ~ 7652998 (-) False XLOC_028501
TCONS_00055314 lncRNA upstream 2590 7872321 ~ 7875551 (-) True XLOC_028507
TCONS_00058061 lncRNA upstream 101951 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058062 lncRNA upstream 343439 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00057326 lncRNA upstream 349730 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 764973 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055307 mRNA downstream 39204 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055304 mRNA downstream 177964 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055302 mRNA downstream 619649 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055300 mRNA downstream 638254 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055296 mRNA downstream 1041806 6799794 ~ 6809323 (-) False XLOC_028492
TCONS_00055309 mRNA upstream 653 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055312 mRNA upstream 1097 7870828 ~ 7875808 (-) False XLOC_028507
TCONS_00055315 mRNA upstream 132143 8001874 ~ 8014463 (-) True XLOC_028509
TCONS_00055316 mRNA upstream 160237 8029968 ~ 8030583 (-) True XLOC_028510
TCONS_00055317 mRNA upstream 164650 8034381 ~ 8035520 (-) True XLOC_028511
TCONS_00055306 other downstream 171034 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055301 other downstream 628762 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055299 other downstream 665818 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 1283863 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 1399397 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055310 other upstream 934 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055311 other upstream 1005 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055313 other upstream 1164 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055327 other upstream 271618 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055328 other upstream 718056 8587787 ~ 8587908 (-) True XLOC_028518

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU306993 True 2923 lncRNA 0.48 18 CI01000066 48452 ~ 57697 (+)