RNA id: TCONS_00055311


Basic Information

Item Value
RNA id TCONS_00055311
length 802
RNA type nonsense_mediated_decay
GC content 0.43
exon number 8
gene id XLOC_028507
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7870384 ~ 7876005 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAATTACTGTAGCTGTTCAGACTGATCAAGATGAGCTCTCCAACGAAAGCCACCACTACAGAACCTCATGTAATCAAAGAGGAGTTGGTAGCGAGTGGAAATTGGGTGAAGCTTGAGAAAACCACTTATGTGGATCCTTCTGGAAGCACCAGAACATGGGAAACAGTGAAGAGAACAACCCGAGTCGCCAACACTGCAGCTGatgGTGTGGGAATCATAGCTCTCCTGAAGAGGACTCTACACAAAGACTGCGTCGTCATGGTCAAGCAGTTTCGACCACCCATGGGATGCAACACACTGGAGTTTCCTGCAGCACAAAGATTGTTATGGTGCATATTAATGGAGACGACATTGAAAATATAAACCCCACACAGCAGCTGGGTGATGGAGAATTTGTGGAGGTTATTCTTTTACCTCTGgatgaatttcagcaaaaaatTGATGaGCTGCTTCAGAAAGAGAAAATAGTGGTGGACTGCAAGGTGTACATTTATGCAATGGGAATGTCTCAAGCCTTCTTTAAACCCAGAGAGCTGCCCGTGCTGAAGCAGTGAATGCACAGATCTCTCTTCTGGAATGCAACGAAGACCGTTTTCTGAGCTGTAACACACTTTTTTGAGCTATTTAGAGAGATGAAATCCAGTACTTGACCATGGCTTTCATGTTTTACCACAGTTGCCTCAACATTCCTAACAAACTAACAGTACTTAATTATCAGGTAATCAGTGTTTTGCACAGTTTTAGAATTTGTGATAGCAAATAGGACTTTTTCCTgataaaattaaactaaagtgTAGGGT

Function

GO:

id name namespace
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0047631 ADP-ribose diphosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-040625-63 Predicted to enable ADP-ribose diphosphatase activity. Predicted to be involved in nucleoside phosphate metabolic process and ribose phosphate metabolic process. Predicted to be active in nucleus. Orthologous to human NUDT5 (nudix hydrolase 5).

Ensembl:

ensembl_id ENSDART00000160915

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055305 lncRNA downstream 197613 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058060 lncRNA downstream 217568 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00058058 lncRNA downstream 217738 7640406 ~ 7652998 (-) False XLOC_028501
TCONS_00058061 lncRNA upstream 95922 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058062 lncRNA upstream 337410 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00057326 lncRNA upstream 343701 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 758944 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 833322 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055308 mRNA downstream 1005 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055307 mRNA downstream 58811 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055304 mRNA downstream 197571 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055302 mRNA downstream 639256 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055300 mRNA downstream 657861 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055315 mRNA upstream 126114 8001874 ~ 8014463 (-) True XLOC_028509
TCONS_00055316 mRNA upstream 154208 8029968 ~ 8030583 (-) True XLOC_028510
TCONS_00055317 mRNA upstream 158621 8034381 ~ 8035520 (-) True XLOC_028511
TCONS_00055318 mRNA upstream 164031 8039791 ~ 8040436 (-) True XLOC_028512
TCONS_00055319 mRNA upstream 167045 8042805 ~ 8043964 (-) False XLOC_028513
TCONS_00055306 other downstream 190641 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055301 other downstream 648369 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055299 other downstream 685425 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 1303470 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 1419004 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055327 other upstream 265589 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055328 other upstream 712027 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055389 other upstream 2785801 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 3730998 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 3732436 11608196 ~ 11608283 (-) True XLOC_028575

Expression Profile

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