RNA id: TCONS_00055314


Basic Information

Item Value
RNA id TCONS_00055314
length 546
lncRNA type retained_intron
GC content 0.46
exon number 5
gene id XLOC_028507
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7870384 ~ 7876005 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTGGTAGCGAGTGGAAATTGGGTGAAGCTTGAGAAAACCACTTATGTGGATCCTTCTGGAAGCACCAGAACATGGGAAACAGTGAAGAGAACAACCCGAGTCGCCAACACTGCAGCTGatgGTGTGGGAATCATAGCTCTCCTGAAGAGGACTCTACACAAAGACTGCGTCGTCATGGTCAAGCAGTTTCGACCACCCATGGGATGCAACACACTGGAGTTTCCTGCAGGTCTGATAGATGAAAACGAGAGTGCTGAAACTGCTGCTCTGAGAGAACTGAAGGAGGAAACTGGGTACAAAGGGGAGGTAGTGGGCGTCACACCAGTTACATGTTTAGACCCGGGCTTGTCTAATTGCAGCACAAAGATTGTTATGGTGCATATTAATGGAGACGACATTGAAAATATAAACCCCACACAGCAGCTGGGTGAGTAAAGGAGCATTACTGTATCTAACACAGTCATGTTGAAATTCATGTTGTGTTTTTAAACGATTGCTCTTTCTCTTTTTTCCATCTTGTATGTCTAGGTGATGGAGGTATGGG

Function

GO:

id name namespace
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0047631 ADP-ribose diphosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-040625-63 Predicted to enable ADP-ribose diphosphatase activity. Predicted to be involved in nucleoside phosphate metabolic process and ribose phosphate metabolic process. Predicted to be active in nucleus. Orthologous to human NUDT5 (nudix hydrolase 5).

Ensembl:

ensembl_id ENSDART00000165270

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055305 lncRNA downstream 199198 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058050 lncRNA downstream 219132 7598400 ~ 7653189 (-) False XLOC_028501
TCONS_00058060 lncRNA downstream 219153 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00058051 lncRNA downstream 219200 7607656 ~ 7653121 (-) False XLOC_028501
TCONS_00058057 lncRNA downstream 219200 7626078 ~ 7653121 (-) False XLOC_028501
TCONS_00058061 lncRNA upstream 96131 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058062 lncRNA upstream 337619 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00057326 lncRNA upstream 343910 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 759153 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 833531 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055308 mRNA downstream 2590 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055307 mRNA downstream 60396 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055304 mRNA downstream 199156 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055302 mRNA downstream 640841 7229236 ~ 7231480 (-) True XLOC_028497
TCONS_00055300 mRNA downstream 659446 7210755 ~ 7212875 (-) True XLOC_028495
TCONS_00055315 mRNA upstream 126323 8001874 ~ 8014463 (-) True XLOC_028509
TCONS_00055316 mRNA upstream 154417 8029968 ~ 8030583 (-) True XLOC_028510
TCONS_00055317 mRNA upstream 158830 8034381 ~ 8035520 (-) True XLOC_028511
TCONS_00055318 mRNA upstream 164240 8039791 ~ 8040436 (-) True XLOC_028512
TCONS_00055319 mRNA upstream 167254 8042805 ~ 8043964 (-) False XLOC_028513
TCONS_00055306 other downstream 192226 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055301 other downstream 649954 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055299 other downstream 687010 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055295 other downstream 1305055 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055293 other downstream 1420589 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055327 other upstream 265798 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055328 other upstream 712236 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055389 other upstream 2786010 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 3731207 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 3732645 11608196 ~ 11608283 (-) True XLOC_028575

Expression Profile

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