RNA id: TCONS_00058061


Basic Information

Item Value
RNA id TCONS_00058061
length 774
lncRNA type intronic
GC content 0.38
exon number 2
gene id XLOC_028508
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7971682 ~ 7973335 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTCCTTTGGGAATTAAACCCCCATACTTACTGACGTATATATTAACACTTTATCTGACAtgtattttaaccctttaataaATAGCCCTAGTATGCAGGTTCCTTAGGAATTGAACCCACAACCTACTGACATGTATGCTTAATATGTGCCCCTTTTGTTATGAATGAACCCACAACTTACTgacatatatacagtattaacCCTTTATCTGACATGTATTTTAACCCTTTGATAAATAGTCCTAGTATGCTAAGGAATCAAACCCACAACCTACTGACATATATTATGTTGTAtgttttcaaaacacttttatagTATTATTTTGAAACACTGGAGATTACTAGCCCTAGTCCTGTGTAAAAAATGACTGAATATTTCTTTTGGCTGAGCAATACTTTTAGATGATCACTGTAATCCCCTGAAAACACATCATCATACACCTTGATAACAGTCAACATTACGCTTAGTAAACAAGCGTAAATAAACCCCCAAGAGCCTTTGGAACCCGTCTGATTAAAGAAAAGACGGCTGATTAAACCTGAGTAACATAAATCACACTTCTCCAACATCTCTAGGAATGTTTTTTTTCACCCATCATCAAAGCCATTAAAATACCTTTCCTCATGGGGAACGGAGGCAGTCGGGGAGAAAGGGATGGTAATTTTCTGCCTGATTTCGACCCCATTAGCTTGCTGTTTTTTCTGTCTTCTCGTTGGGTTTGCTAATCAGTGGCTAAGAGAATTAGCTACGGTTTCGGCCGGTTGTCATTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055314 lncRNA downstream 96131 7872321 ~ 7875551 (-) True XLOC_028507
TCONS_00055305 lncRNA downstream 298559 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058060 lncRNA downstream 318514 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00058058 lncRNA downstream 318684 7640406 ~ 7652998 (-) False XLOC_028501
TCONS_00058062 lncRNA upstream 239835 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00057326 lncRNA upstream 246126 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 661369 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 735747 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00058063 lncRNA upstream 930956 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00055309 mRNA downstream 95677 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055312 mRNA downstream 95874 7870828 ~ 7875808 (-) False XLOC_028507
TCONS_00055308 mRNA downstream 101951 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055307 mRNA downstream 159757 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055304 mRNA downstream 298517 7653607 ~ 7673165 (-) False XLOC_028503
TCONS_00055315 mRNA upstream 28539 8001874 ~ 8014463 (-) True XLOC_028509
TCONS_00055316 mRNA upstream 56633 8029968 ~ 8030583 (-) True XLOC_028510
TCONS_00055317 mRNA upstream 61046 8034381 ~ 8035520 (-) True XLOC_028511
TCONS_00055318 mRNA upstream 66456 8039791 ~ 8040436 (-) True XLOC_028512
TCONS_00055319 mRNA upstream 69470 8042805 ~ 8043964 (-) False XLOC_028513
TCONS_00055310 other downstream 95738 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055313 other downstream 95752 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 95922 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055306 other downstream 291587 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055301 other downstream 749315 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055327 other upstream 168014 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055328 other upstream 614452 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055389 other upstream 2688226 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 3633423 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 3634861 11608196 ~ 11608283 (-) True XLOC_028575