RNA id: TCONS_00055316


Basic Information

Item Value
RNA id TCONS_00055316
length 513
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_028510
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8029968 ~ 8030583 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACGACACCTAACACAAGCAAGTCATGGCAGTCTTTTGTGATCTCCGGCTGGTTTCTCTGGCCGTGCTGATGCTGGCGTCTCAGCTGGACTTTGCCAGTGCTTCTGTTCGGGTGTTTGGCTTGCATGCCAGGGACCTCACCGGGGATCCTTTCGGAAACGAACCCGATCCCTACGTGAAGGTCTGGTGTGGCGCTGTTTCCGGGGGGCAGACTGAATATCACAAGGATAACGCTAATCCTACATGGTCTGCAGAGTTCAACTTCCCAAACTGCAAATGCGGTGATGACGTGAAGCTGGAGATTTGGGACAAAGACAAGACTTTCGACGATCATTTGGGCACTTGCAACAAATTAGTTCAGTATGGGTCTTTCGCCGTTACTTGCTATCTGAACAAAGGAACCTTCTTTTACAGGTATGAAGCAAAATAAGTTTCAACTTGTAAAGCTATGCTCTGAGACAGCCTCCTTTGTGTGATGCTCGATAACAATAAAGTTGAACAGCAATCACTGaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-330 No description available

Ensembl:

ensembl_id ENSDART00000113628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058061 lncRNA downstream 56633 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00055314 lncRNA downstream 154417 7872321 ~ 7875551 (-) True XLOC_028507
TCONS_00055305 lncRNA downstream 356845 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058060 lncRNA downstream 376800 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00055303 lncRNA downstream 376987 7650003 ~ 7652981 (-) False XLOC_028501
TCONS_00058062 lncRNA upstream 182587 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00057326 lncRNA upstream 188878 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 604121 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 678499 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00058063 lncRNA upstream 873708 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00055315 mRNA downstream 15505 8001874 ~ 8014463 (-) True XLOC_028509
TCONS_00055309 mRNA downstream 153963 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055312 mRNA downstream 154160 7870828 ~ 7875808 (-) False XLOC_028507
TCONS_00055308 mRNA downstream 160237 7851129 ~ 7869731 (-) True XLOC_028506
TCONS_00055307 mRNA downstream 218043 7718854 ~ 7811925 (-) True XLOC_028505
TCONS_00055317 mRNA upstream 3798 8034381 ~ 8035520 (-) True XLOC_028511
TCONS_00055318 mRNA upstream 9208 8039791 ~ 8040436 (-) True XLOC_028512
TCONS_00055319 mRNA upstream 12222 8042805 ~ 8043964 (-) False XLOC_028513
TCONS_00055320 mRNA upstream 12794 8043377 ~ 8043839 (-) True XLOC_028513
TCONS_00055321 mRNA upstream 14981 8045564 ~ 8155571 (-) False XLOC_028514
TCONS_00055310 other downstream 154024 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055313 other downstream 154038 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 154208 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055306 other downstream 349873 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055301 other downstream 807601 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055327 other upstream 110766 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055328 other upstream 557204 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055389 other upstream 2630978 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 3576175 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 3577613 11608196 ~ 11608283 (-) True XLOC_028575

Expression Profile

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