RNA id: TCONS_00055319


Basic Information

Item Value
RNA id TCONS_00055319
length 1084
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_028513
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8042805 ~ 8043964 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATAAAGAGGGTGAGGTTTTGGTAACATTCATACGGACACCAGTGCGAGTGAACCATGGGAGTCCTTTATGATCTTCGGCTGGTGTCTCTAGCCGTATTGATGCTGGCGTTTCACCTGGACTTTGGCAAAGCTGACGTCCGAGTGTTTGATATTCACGCCATGGACCTCTCTGGAGATGTCATCGGAAACAAACCCGATCCGTATATCAAGATCTGGTGTGGCTCTACTTTTGGAGGGATGACGGAGTTTCTCAACAGTACTAATAATCCTGAGTGGTCTGCAGAGTTCAGCTTCCCCATATGCAAAGCTACTGAGATCCTGAAGCTGGAGGTGTGGGACAAAGATCTGTTTTTTGATGATAAATTGGGCACGTGTACTAGAACCGTGCAGTATGGGTCATTTGACATTCCTTGTCATCTGTCGAAAGGAACTCTGTTCTACAAGTATGAGTTGAGATGATTTGTACCAAAGCTTATTTGAGACAAATTTCCACTGTAAGTAGATTGAtggtaataaaaaaatgtcatgaaCGCTCTGCAGAGTATGTTTTCGCATTGATATGCAAATTATCAGCCCTCTTCTTTTTcacatattttccaaatgatgtttaacagagcaaggaatttttcacagtatttcctataatattgtttcttctggagaaagtcttattagttttatttaggctagaatgaaagcagtttctacctttttcaatattattagctcccttcaacagtatttgttttcgattgtgTACGGagcaaaccatctttatacaatgttataccctagttaagcctttaaatatcactttaagctcaatacttgTATCTTGAAAACTATAAAGCCAAATATtatgtcctgtcatcatggcaaagataaaagaaatccgttattagaaatgagttactaaaactgttatgttctttctattaaacagaaatagggggaaGAAAATATACAAGGagactaataatactgacttcagctgtatgctTGGTTGAAATTTAATGCTAATGTATTTCCTCATTTGTTAAACGCTTTCAATCTgttcattaaaaatgctgataaaAGCTTTAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-327 No description available

Ensembl:

ensembl_id ENSDART00000057567

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058061 lncRNA downstream 69470 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00055314 lncRNA downstream 167254 7872321 ~ 7875551 (-) True XLOC_028507
TCONS_00055305 lncRNA downstream 369682 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058060 lncRNA downstream 389637 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00055303 lncRNA downstream 389824 7650003 ~ 7652981 (-) False XLOC_028501
TCONS_00058062 lncRNA upstream 169206 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00057326 lncRNA upstream 175497 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 590740 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 665118 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00058063 lncRNA upstream 860327 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00055318 mRNA downstream 2369 8039791 ~ 8040436 (-) True XLOC_028512
TCONS_00055317 mRNA downstream 7285 8034381 ~ 8035520 (-) True XLOC_028511
TCONS_00055316 mRNA downstream 12222 8029968 ~ 8030583 (-) True XLOC_028510
TCONS_00055315 mRNA downstream 28342 8001874 ~ 8014463 (-) True XLOC_028509
TCONS_00055309 mRNA downstream 166800 7870384 ~ 7876005 (-) False XLOC_028507
TCONS_00055321 mRNA upstream 1600 8045564 ~ 8155571 (-) False XLOC_028514
TCONS_00055322 mRNA upstream 3327 8047291 ~ 8152746 (-) False XLOC_028514
TCONS_00055323 mRNA upstream 4900 8048864 ~ 8058214 (-) False XLOC_028514
TCONS_00055324 mRNA upstream 4952 8048916 ~ 8152746 (-) False XLOC_028514
TCONS_00055325 mRNA upstream 5039 8049003 ~ 8060962 (-) False XLOC_028514
TCONS_00055310 other downstream 166861 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055313 other downstream 166875 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 167045 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055306 other downstream 362710 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055301 other downstream 820438 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055327 other upstream 97385 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055328 other upstream 543823 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055389 other upstream 2617597 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 3562794 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 3564232 11608196 ~ 11608283 (-) True XLOC_028575

Expression Profile

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