RNA id: TCONS_00005228


Basic Information

Item Value
RNA id TCONS_00005228
length 117
RNA type rRNA
GC content 0.54
exon number 1
gene id XLOC_002819
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 27414246 ~ 27414362 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAcgcagccatatcaccctgtaccgcaagactggttactcactgaagctaagcaggcctGAGCCTGGACAGTACCTGGATGGgcgaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179446

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006063 lncRNA downstream 252101 27157937 ~ 27162145 (-) False XLOC_002816
TCONS_00006062 lncRNA downstream 252101 27157937 ~ 27162145 (-) True XLOC_002816
TCONS_00006061 lncRNA downstream 411632 27000562 ~ 27002614 (-) False XLOC_002813
TCONS_00006060 lncRNA downstream 411632 27000562 ~ 27002614 (-) True XLOC_002813
TCONS_00005211 lncRNA downstream 411842 27000562 ~ 27002404 (-) False XLOC_002813
TCONS_00006064 lncRNA upstream 783554 28197916 ~ 28202821 (-) False XLOC_002823
TCONS_00006065 lncRNA upstream 783554 28197916 ~ 28267126 (-) False XLOC_002823
TCONS_00006067 lncRNA upstream 783554 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00006066 lncRNA upstream 783554 28197916 ~ 28291300 (-) False XLOC_002823
TCONS_00006068 lncRNA upstream 783554 28197916 ~ 28291679 (-) False XLOC_002823
TCONS_00005221 mRNA downstream 190419 27183757 ~ 27223827 (-) False XLOC_002818
TCONS_00005226 mRNA downstream 215111 27183861 ~ 27199135 (-) False XLOC_002818
TCONS_00005225 mRNA downstream 215111 27183861 ~ 27199135 (-) False XLOC_002818
TCONS_00005219 mRNA downstream 217202 27182704 ~ 27197044 (-) False XLOC_002818
TCONS_00005227 mRNA downstream 218153 27183906 ~ 27196093 (-) False XLOC_002818
TCONS_00005229 mRNA upstream 323877 27738239 ~ 27741809 (-) True XLOC_002818
TCONS_00005230 mRNA upstream 563011 27977373 ~ 28028999 (-) False XLOC_002820
TCONS_00005231 mRNA upstream 612247 28026609 ~ 28028998 (-) False XLOC_002820
TCONS_00005232 mRNA upstream 612465 28026827 ~ 28027490 (-) True XLOC_002820
TCONS_00005234 mRNA upstream 615216 28029578 ~ 28118035 (-) False XLOC_002821
TCONS_00005218 other downstream 244174 27169956 ~ 27170072 (-) True XLOC_002817
TCONS_00005214 other downstream 405122 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005203 other downstream 670115 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005187 other downstream 1211723 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005183 other downstream 1273165 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005237 other upstream 784532 28198894 ~ 28199041 (-) False XLOC_002823
TCONS_00005238 other upstream 878481 28292843 ~ 28292959 (-) True XLOC_002825
TCONS_00005248 other upstream 956847 28371209 ~ 28372485 (-) True XLOC_002827
TCONS_00005250 other upstream 1028378 28442740 ~ 28443740 (-) True XLOC_002831
TCONS_00005251 other upstream 1033544 28447906 ~ 28448868 (-) True XLOC_002832