RNA id: TCONS_00055324


Basic Information

Item Value
RNA id TCONS_00055324
length 5748
RNA type mRNA
GC content 0.56
exon number 27
gene id XLOC_028514
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8045564 ~ 8155571 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCATCGGAAAATCCCAACAAGGTGGTGACCTTCTTGGCCCCGCCACCTCCAAAGAATGTGAATGGCTCCGGTTCAGACTCGCTGGTTGGTGAGAAGCTAGACACGGAGGTCAGAAAGCGACGCCACACCATGGATAAAGATCTGAAGACGGCCGAGCATAGATTTTTCAGACGTAGCGTCATCTGTGACTCCAATGCCACAGCCCTTGACTTGCCCAGCAAGGCCTGCATCCTCACCTCACCTCCAGACTGCGAGCAGTTTGTTATACCCACGGTGCTGAGTTCGACCCCTGATGTAACTCTTGACACCCAAACAGTAGTTTCGGCGGCCGTAGTGGAAGAACGTTCAGAGGATGAAAGACGTGCTGGGGTTGAAGGGATTGTGGAGGTACAGAGTCCTTCTGTGCAGGATGCAGGCTCAAGGCAGAGTGAAGTCCTTGGGAAGGTGGAGACCGAGCTCAGTGATGTTGGTGACAAAGAGCAAGAGAGTCGAGTGACAGAcaagcaggaggaggaggagagagggGTGGCGAAGGCCCGTGCTGAAGCTGAGCTGAGGGAGGCTGTGAAAAAGGAGCAGGACGAAATTGAAGAAGTCGAGACCAAAGCTGTGGGCACCTCTCCTGATGGCCGCTTCCTCAAATTTGACATCGAAATTGGACGTGGATCATTCAAAACGGTCTACAAGGGCTTGGACACAGAGACAACAGTGGAGGTGGCGTGGTGTGAACTTCAGGATCGGAAGCTGTCCAGATCAGAGCGCCAGAGATTCAAGGAAGAGGCCGGCATGCTGAAAGGCCTGCAGCACCCAAACATTGTGCGTTTTTACGATTCATGGGAGTCTCCTTCCAAAGGGAGGAAGTGCATAGTGCTGGTGACGGAGCTCATGACATCAGGAACCCTGAAAACATATCTGAAACGCTTCAAGGTGATGAAGATAAAGGTGTTGCGAAGCTGGTGCCGACAAATCCTGAAGGGCCTGCACTTCCTGCACACCAGGGCTCCACCAATCATCCACCGGGACCTGAAGTGTGACAACATCTTCATCACCGGACCCACCGGCTCAGTAAAGATCGGTGATCTGGGCCTGGCCACCCTCAAGCGTTCTTCGTTCGCTAAAAGCGTCATAGGTACCCCTGAGTTCATGGCGCCTGAGATGTACGAGGAAAAATACGACGAGTCGGTGGACGTGTACGCCTTCGGGATGTGCATGCTGGAGATGGCTACCTCAGAGTACCCGTACTCCGAGTGTCAAAACCCTGCTCAAATCTATCGCAGAGTCACCAGCGGAGTTAAACCTGGCAGTTTCGACAAGGTAGCCATTCCAGAAGTGAAAGAGATCATCGAGGGATGTATTCGGCAAAACAAAGATGAAAGATACGCCATTAAAGACCTTCTGAACCATGCCTTCTTCCAAGAGGAGACCGGGGTGCGGGTGGAACTGGCTGAGGAGGATGATGGGGAGATGATCGCCATCAAGCTCTGGTTGCGCATTGAAGACGTCAAGAAACTGAAAGGCAAATACAAAGACAACGAAGCCATCGAGTTCTCCTTCGACCTCCATCGGGACGTGCCAGACGATGTGGCTCAGGAAATGGTCGAGTCGGGTTATGTTTGCGAGGGTGACCACAAAACCATGGCCAAGGCCATCAGGGACCGTGTGTCGCTGATCTCCCGCAAACGAGAACAACGACAACAGGTGCGAGCCGAGCAAGAAAAACGCAAGCAGGAGGAAGAGCAGAAACTGTTATCCAGTGAGTCTATTAAGAACGTGGCCGGAGCTCAAGGAACGCAAGGTTCTCTACAGAGTCAGTGTAGCTCCCAACCTCCAACTCCCGGCCTTGTGCAGCCCGAGTGTGAGGAGCCTGATGCAGATCCGCAACATCAATACATGCAAAGTGGAATAACCTTGGCGGACGGGACATTTGACAGTGGTCAGGGTTCATCAGTGTTCTCAGAACCTCACCTCAGCCAGCTAAGCATGTCGTATAGTTCTCCTGGAACATCCCAACAACAGCAGGTCCCAGGACAGGGCACCTACACTCCCAGCTCTCAAGCTCCCCAACAGCACACCGCATATCCCCAGCAGCCCATGGTTCAAGTCCCCATTCCTCAGTCTACAAGTGGCATGTCTCTGGCTTCCTGCAGCACCCCAGCCGCCTCTGCCTCCCAACAGTATGGAGTTTACTACGTCCAAGCACTCCCTACGCAGGCTCCTGTTCAGCAGCCGGCCTCTCTAGGTCCCACTTCCCAACCCTGTGCCTCGCTACCCCAACAACAAACACCCCAACAGCCTTCCAGCACTGTAGCTCAGAGCATCTCCCAAACGCAAATCACGCCAACACAGACGTCTCACAGCGCATCGCAGACTTTGACAACAGAGCTGTCACAACTCCAAACTCCTGCTGTGGAGAGcagTCATTCTGATGTAGCTTCTGGGCTCAGTGATGGCAATGAGGGCGTAACAGGTGGTAGACATGAGGGTCGTCCTGCCAAAAGACACCAGCGCAGATCGGTGCGCAGCCGTTCACGCAATGAAAAGACCTCGAAGGTCAAGCTCAGTGTGCTTAATATCTCCAGCATGGGTGACAGAGTTGCAGAGTGTCAATTAGAAACACACAACAGGAAAATGGTGACTTTCAAGTTCGATCTTGATGGTGATAACCCAGAGGAAATTGCACAGATAATGGTACAAAGTGAATTCATTCTTGAAAGCGAGCGTGAATCGTTCATCGATCGGATCCGAGAAGTGATCGAAACAGCTGATGAGAAGGGGGTGGAGAGAGAGCGCAGTCAGATGGCCAGTGATCATGAGCAGCTTATGCCCACAACATCTGCGCCTCTTGAACATGGTAGAACTTACAATCTCAGTGTACCACCTAGTTCAGCTGCacaggtggttcattctgcaggCCGCAGGTTTATCGTGAGTCCAGTGCCTGAATCCAGACTGAAGGATCAGTTCTTTAGCCCATCCCAACCTACAATCCCACTTCATGAAGAACCTGCCCCTGTGCCAGTTGCATTGCCTGCCTTGGGGCTCTCTGTGTCTGCGTCTGCTGTCAGCCTGCAGCAGGCGTTCACTGAGATGCGTCAAGCCCACTTTGACCCAGGTCCCAGCACTGCACCCCCTATGCTCCACAACTCCATGCCCCCTCTGCTTCCTGCCACAACACCCTTGCCCTCTAGTGCCACCCCAGTGGTCTCTCCCCCAGTGTCTTCAGAAGTGACCTCTTCGCCATCTCTACCTTCTATAAACCCTCCAGTGTCATCATCTCCTCCTCCAACCGTCCCGGTCAATTCCGTAACCTCCCCTCCAGCACAACTCACCCTGCCTCAAAGTCAAGTTGCGCCTGCCGTCATCAGTGTTATTCCCACCCCTTCCACTCTGCCAATGCCAGCGGTGCCAACTGCCACATCCCTTCCACAAACTTCAGTCACCGTACCTTCCAGCACACCAATCGCTCCAATGGGATCAGTGTCCGGAGGCAGTGGAGAACAACCATCCATCCCTGCTACTTCTTCGCCCACTAGCGCTACAATCCAAACGCCACAGCTGGCACCATCCACCATCCCCACCACCACGGCTCAGTCACAAGTGCCCCCTCTCCAGCCGGTGACCACAACCATGCCAGTCGTGCAGCCCACACCAGTGCACAGCCAACCACAGACCACCACCGTGCCCAATCAGAGCCATGCGCATAGTGTTGAATGCGACAGTGACCAGCAGGGCAAGGTTGATGACATCCAGGCTCTAGATAAGAAGCTGCGCTCGCTCTTTATGGACTTGGGCTCCGGTCCCCCATCTGCCCAGTCTGATGTCACATCCGACCCGACGGCGACTCCAAGCGTTCCTGGCACCTCGTCTCCAACCACATGTGCCACCCCCAGCGGGACTCCACTCCCTCCCTCTAGTTTACCCCTGAACTCCTCCACTCAGTCTGCGGGGTCTCCCATGACCTCCATGGGCAATGCCTCCACCCCGGTCGGCTACAGTCAGACCACTCCATCCAAAGCTCCCTTAACACGATTACCGGTGTTGCCTGTCGGCCCAGATCAGGCTGGCACGCCGCCCACAGAGCACCTTCCACCCTTCCCAGGACCTGGTTTAATTCAGTCCCAGCAGCCCCTGGAGGATCTGGATGCCCAGCTGAGACGGGCACTGAGTCCGGAGACCGTCCCAATCAGCAGTGTCACGCACCAGTCATCTCTAACCGGGATGCCACCTGGAGGACAGCCAGTTCCGTTTTCTCTGGATGATGAGCAAGCAGCCGCACCTGCAGCTGGAGGATACAAACTGGGGCGATTCCAGGTGTCGGTGGCCACTGATGAGAACACCACACAGACTCCAACCAGCTCATCCTCTTCCACATCATCTTCCTCCAccacctcctcttcctcctcctcctgtaGTCTGTCCAGCCCTGAAAACACACTGCACAGAACCTCCTCTCCCCTCATAGACACAGGCGCAGATGTGGTCGATGGTCTCCCTGCTCTCCCCAACCAGACAACGACCCAGCCTCAGCCCACCACCATCGGCCGCTTCCAGGTCACGACCAAAACAGACACGCAGGTGGGACGCTTCTCTGTTAGCAAAGCACAGGACGAGGTGACTACATCCACCTCACAACCTCAGCCCACACCTCAAACCCATTCTGCTGTGGGCAACGGTCCAGCACAGAGTCCCGGGAGCTTAAACAACTCCATCAGCTCCTATTTCAGCAGCGATAATGACTCGGAGTTTGAAGACGAGGACTTTAAGAGAGAAGTCAGCAGGCTGAGAGACAAGCACATGATAGAGAGTCAGGCTCTATATTCTCGTCAGAAAGCAGAGATTGAGGCTCTGTTTGCCCGTTTGGGGAAAGTTCCACCTGCTATGGTTAACCCACCTGTGGTGAACCCAGCCGGCCGCAGGAGACGCCCCACCAAGAGCAAAAGCAGCAAATCCAGCCGCGGGAGCTCGCAGGCTAGCAAGAGTCCCGTACAGCCAGCAACCAGCACTTTATCAGCACAGAGCGCCCCTTCTGTGTACCCAGCCCAGCAGGCCTTCCTGGCCCCCGGGGGGATGATGGATGGGGGGAGCAGCCCTCTGCTGCAGTCTTTCAAACCCTCGCCCTCCAATGACAACCTGTGCTCCACTTTCACCAGTGACGCCACGCTCTCTGCGCCCAGTCTCTGTGTAACCTCGCAAGGGACGAGCAGCACCAACACGGTGGCAGGACCCGGTCAGAACCAAAGCCAGCCACCCGTCTCTCAGTCTCAGAGCTGCAAGGGCATGTTCACAGACGAGCTGCACAAACTGGTGGACAACTGGGCCCGGGACGCCATGAACCTATCACAGGGCAAGAGAGGCTCCAAACACCAACAGCAAGTGGTTCCTCAGGGCCACAGCTACGAAATGGTTCCTCCAGTAAACATGGGCCGTAAGTACTCAGCTCCGGGTCAGCTGTGCCCAAGCATCGCTTCAACTCTGAGCGGCCATCCACCAATGCCCAACACTCCCGCTACCTCTCTAGGAGCTCGGAAGGGCTCCTTGTGTCCCACGCCGCAGTACGGCTACCCCTCCGCACCTTACAGCGCCCAGTGGGCTGGAGCGGCCACGCACACCCAGGCCGGTCTGCTGGCCACCTCACAACCCCTGGGCCAATATCCCCAGGTGCCCACCCCTTTACAGACCTTCCACATCAGCACTTTGCAAAAGTCAGTCAGCCACCCGGGCGGACCCAATCTGAAGAGCACGTAG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0032414 positive regulation of ion transmembrane transporter activity biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010766 negative regulation of sodium ion transport biological_process
GO:1903288 positive regulation of potassium ion import across plasma membrane biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0050801 ion homeostasis biological_process
GO:0016310 phosphorylation biological_process
GO:2000651 positive regulation of sodium ion transmembrane transporter activity biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0019869 chloride channel inhibitor activity molecular_function
GO:0019870 potassium channel inhibitor activity molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2656 Predicted to enable chloride channel inhibitor activity; potassium channel inhibitor activity; and protein serine/threonine kinase activity. Acts upstream of or within angiogenesis and posterior lateral line neuromast development. Predicted to be active in cytosol. Is expressed in several structures, including midbrain neural keel; midbrain neural rod; notochord; posterior lateral line neuromast; and trunk. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 2A; hereditary sensory neuropathy; hypertension; and pseudohypoaldosteronism. Orthologous to human WNK1 (WNK lysine deficient protein kinase 1).

Ensembl:

ensembl_id ENSDART00000177482

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058061 lncRNA downstream 75581 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00055314 lncRNA downstream 173365 7872321 ~ 7875551 (-) True XLOC_028507
TCONS_00055305 lncRNA downstream 375793 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058060 lncRNA downstream 395748 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00055303 lncRNA downstream 395935 7650003 ~ 7652981 (-) False XLOC_028501
TCONS_00058062 lncRNA upstream 60424 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00057326 lncRNA upstream 66715 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 481958 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 556336 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00058063 lncRNA upstream 751545 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00055319 mRNA downstream 4952 8042805 ~ 8043964 (-) False XLOC_028513
TCONS_00055320 mRNA downstream 5077 8043377 ~ 8043839 (-) True XLOC_028513
TCONS_00055318 mRNA downstream 8480 8039791 ~ 8040436 (-) True XLOC_028512
TCONS_00055317 mRNA downstream 13396 8034381 ~ 8035520 (-) True XLOC_028511
TCONS_00055316 mRNA downstream 18333 8029968 ~ 8030583 (-) True XLOC_028510
TCONS_00055329 mRNA upstream 456771 8609517 ~ 8611841 (-) True XLOC_028519
TCONS_00055332 mRNA upstream 586347 8739093 ~ 8779141 (-) False XLOC_028522
TCONS_00055333 mRNA upstream 590809 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055334 mRNA upstream 627433 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055335 mRNA upstream 697070 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055310 other downstream 172972 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055313 other downstream 172986 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 173156 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055306 other downstream 368821 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055301 other downstream 826549 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055328 other upstream 435041 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055389 other upstream 2508815 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 3454012 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 3455450 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 4122368 12275114 ~ 12286066 (-) True XLOC_028592

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00006959 True 1398 mRNA 0.54 7 CM030134.1 28931030 ~ 28966524 (-)