RNA id: TCONS_00058062


Basic Information

Item Value
RNA id TCONS_00058062
length 1133
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_028516
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8213170 ~ 8214435 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATTACAACGACATGGCAAAatccagacagtgcaaatacaacgacaatgtaaaattgacagtgatatgtacaatgaataggtgtccacatagttgaggataataataaatataataataacaataacaacaataacaacaataataataataataataataataaagtcccTTCAAATAAAGTGTCTAAATTTAAAATTGTTTAGGTATTAGTACTGAAAAGCAAAACTAGTGTAATAAATTCTGTGTATTAATTACCCCCAAAAAATTAAGGGAGGGGCTTTATTGGATTCTACACACCGGAGCCAATCAACATTAGCTACAAACGAGACTGACCCTCGACTAAACTACTTCCATAACAACATCCTCTGCTTTCAAACAAAGCTGTTGTGTGTTTAAGGTTTGTTTTGCGCAACAATAAACACTAGCTTTGGAGTTTAGCTAAACATTTTCCCGGCGAGGAGATACTTTGTAACTATTCTACGCGTCCGCGATATTTTGTAACCGATACATATTTTCCTGCTGACGTCACAGAGAGTGAGGAGAGACTTCGTAACAATTACTATTCAATCCCGTAGCCGTCTCGCGGACAATTTAAACCTGCTTCACACAGGGACAAGCTAATAAATCAGGAATGAAAGTGCGAAATGCACATGTAGTCACAGGGCTTCCTCTTGACACCGCCTGGGCTGGAGCTTAGGACGGATTCTCAACGGCTTTTACCACACAATAGAGTCCAGGTTGTCCGTGTATGTCGACTCATAAACCTTGCGATGGAAAGAGACTCTCTGCCTGCTCCCTAACACggaatgtgtgtgtatttctccTTCTTTtccctcctccttttcctccattGCCTGCTGGCGCAACAGCGTTTCATTTGAAGAGTCACTCGTGCGCATATTGAGAAATCTCGGGTTTATTTACCTTCCCTTTAGTTTGTCCGGACACATACGGACGAATATAGCCTGTCATTATGCAATATACCGATATATCTCCATATAATCCCACACTATCAATGGGCTGTGTCCGAGCAGACTCTTCAGCTGTGGAAAAATCACTTTGAAAAGCTCCTTACCTTCTTCTACAAGAGATCTAAGAGCCAGGGCGCTTCAAGTGACGTAACGAACCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058061 lncRNA downstream 239835 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00055314 lncRNA downstream 337619 7872321 ~ 7875551 (-) True XLOC_028507
TCONS_00055305 lncRNA downstream 540047 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00058060 lncRNA downstream 560002 7650010 ~ 7653168 (-) True XLOC_028501
TCONS_00055303 lncRNA downstream 560189 7650003 ~ 7652981 (-) False XLOC_028501
TCONS_00057326 lncRNA upstream 5026 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00055330 lncRNA upstream 420269 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 494647 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00058063 lncRNA upstream 689856 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00058064 lncRNA upstream 693294 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00055321 mRNA downstream 57599 8045564 ~ 8155571 (-) False XLOC_028514
TCONS_00055322 mRNA downstream 60424 8047291 ~ 8152746 (-) False XLOC_028514
TCONS_00055324 mRNA downstream 60424 8048916 ~ 8152746 (-) False XLOC_028514
TCONS_00055326 mRNA downstream 119417 8087704 ~ 8093753 (-) True XLOC_028514
TCONS_00055325 mRNA downstream 152208 8049003 ~ 8060962 (-) False XLOC_028514
TCONS_00055329 mRNA upstream 395082 8609517 ~ 8611841 (-) True XLOC_028519
TCONS_00055332 mRNA upstream 524658 8739093 ~ 8779141 (-) False XLOC_028522
TCONS_00055333 mRNA upstream 529120 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055334 mRNA upstream 565744 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055335 mRNA upstream 635381 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055327 other downstream 71704 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 337226 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055313 other downstream 337240 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 337410 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055306 other downstream 533075 7679979 ~ 7680095 (-) True XLOC_028504
TCONS_00055328 other upstream 373352 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055389 other upstream 2447126 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 3392323 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 3393761 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 4060679 12275114 ~ 12286066 (-) True XLOC_028592

Expression Profile

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