RNA id: TCONS_00055329


Basic Information

Item Value
RNA id TCONS_00055329
length 2325
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_028519
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8609517 ~ 8611841 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGAGCGGAGCACAAACGCGAAACGAAACCTCACTCTTTTATCTGATAGCGGACTGAATTTATTTTCTCCCGAGGTTTGTGGCAGTTTTAGACATCTTTTGAAAATGTACGACCGTCTGGATCCCCGGGTCGAGCGAAGACTATTATCAAAGCGCCAAACGGGCAGCAGCGCTGCCTGACCGCCCGCTCGCTGTCGGTCTGAATCGGATCAAGCGTCTTTTGGGggcatttttttgcatttgaatCTTTCCTGCGCCACTGAAAGGATCACCCGGGACGGAGAGTTGCCGATTTGCACACTTAAATGTAAAGAGAAAAGCTTGGGGAGCTTTCTGAAAGCCCTTTTTTTCCTCCGGAGGGGACTACGAGCCGCGACGGTGACCGTTGGTGGGGGTTTGCCGCCGTTTGTTTTCTTGAGCGCGTGTGGAAGATGGAGACGCACATCTCGTGTCTCTTCCCGGAGATTTTAGCCATGATTTTCAGCTACTTGGACGTGAGGGACAAAGGCAGGGTGGCCCAAGTGTGCACAGCGTGGAGGGACGCGTCCTACCACAAGTCCGTGTGGAGGGGGGTGGAAGCCAAGCTGCATCTGAGACGGGCGAACCCGTCTCTGTTCCCCAGCCTCCAGGCGCGAGGCATCCGGCGCGTGCAGATCCTCAGCCTGCGGCGCAGCCTCAGCTACGTGATCCAGGGGATGCCCAACATCGAGAGCTTGAATCTGAGCGGCTGCTACAACTTAACGGATAACGGCCTGGGGCACGCGTTCGTGCAAGAGATCCCTTCCCTGAGGGTGCTCAATCTGAGCCTTTGCAAGCAGATCACGGATTCGAGTTTGGGCAGAATAGCGCAGTATCTCAAAAACTTGGAGGTGCTTGAACTGGGTGGCTGCAGTAACATCACGAACACGGGCTTGTTGCTCATCGCGTGGGGTTTGCACAGACTCAAAAGTCTTAATCTGCGGAGCTGCCGGCATGTGTCGGACGTGGGCATCGGGCACCTAGCCGGCATGACCCGGAGCGCGGCGGAGGGCTGCCTCAGCCTGGAATACCTGACCTTGCAGGACTGCCAGAAGTTGACGGACTTGTCCCTTAAGCACATTTCAAAAGGCCTGACCAAGCTGAAAGTGCTCAACCTGAGTTTCTGCGGTGGCATCTCGGACGCTGGCATGATCCACCTCTCTCACATGACGAGCCTGTGGAGCCTTAATCTGCGTTCGTGCGACAACATCAGCGACACGGGCATCATGCACCTCGCCATGGGCACGCTGAGACTCTCCGGACTCGACGTGTCGTTTTGCGATAAGATAGGCGACCAGAGCCTGGCTTATATCGCGCAGGGCCTGTACCAGCTCAAGTCGCTGTCGCTGTGCTCGTGCCACATCAGCGACGATGGCATCAACAGGATGGTGCGCCAAATGCACGAGCTGAGGACGCTGAACATCGGCCAGTGCGTGCGGATTACAGACAAAGGACTGGAGCTGATCGCAGACCACTTGACGCAACTGACCGGCATCGATCTGTATGGATGTACGAAAATCACTAAGAGGGGACTGGAGAGGATCACGCAGCTCCCCTGCCTTAAAGTTTTGAACCTGGGCCTTTGGCAGATGACTGAAAGTGAGAAAGTGAGGTGAAACTTGGGGGGTTTCTGGAGGGAGGGACGGAGGAGAAGGAGGGCGGGAGGGGGATGGGTGGATTTCAATAGAGCAAAGTACATAAAAAGAGGCGTAAAATGCTGAATGTGATACATGTGTCAGTTATTgctattaacacacacacacacacacacacacaaagttgttTTTGTTAACAAAACGCAATATTAAACCTCCCCCTCCCCGACTATCGCGATATTTTGGCTACCTCGTTAGATGTATTATAATGTTATTCTTAAAAAGAATGAGAATTTGTGCCTAGAAAAACAATCCCCTCCCCCTTTATCTCGTCTTTGGCTTAAGGAAAGCAAAAAGACTGAAAGAAAGGATGGGTTCAGACTACCTTTTTATTTCCCTTCCTTCATATAGCCAACAGAAGGACTTTCAAACAAGTCTATGGGTAGTTGACATCACATTTCAAGCAGATGTGACAGTTGTTCACCTTAAGACGTTTTAGTTCTTCATTATTAAACATGCCATTTCTTTGTGATCCTAAATTAGCCGAGAGACTACATGCAATACTTGCAttaaaatgcatcacatgaccattaaaagtgaagtagatttaaaaaaaaaaaagaggactaAAATCTCGAATGAAGAAAATTCCATGAACATTTGTCAACTACCCTTATGCAAATACTGGGTTTGTACACTAAAGCTTTTATAT

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3556 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Part of SCF ubiquitin ligase complex. Is expressed in hindbrain and midbrain. Orthologous to human FBXL14 (F-box and leucine rich repeat protein 14).

Ensembl:

ensembl_id ENSDART00000067322

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057326 lncRNA downstream 389526 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00058062 lncRNA downstream 395082 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00058061 lncRNA downstream 636182 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00055314 lncRNA downstream 733966 7872321 ~ 7875551 (-) True XLOC_028507
TCONS_00055305 lncRNA downstream 936394 7666715 ~ 7673123 (-) True XLOC_028503
TCONS_00055330 lncRNA upstream 22863 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00055331 lncRNA upstream 97241 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00058063 lncRNA upstream 292450 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00058064 lncRNA upstream 295888 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058065 lncRNA upstream 363276 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055321 mRNA downstream 453946 8045564 ~ 8155571 (-) False XLOC_028514
TCONS_00055322 mRNA downstream 456771 8047291 ~ 8152746 (-) False XLOC_028514
TCONS_00055324 mRNA downstream 456771 8048916 ~ 8152746 (-) False XLOC_028514
TCONS_00055326 mRNA downstream 515764 8087704 ~ 8093753 (-) True XLOC_028514
TCONS_00055325 mRNA downstream 548555 8049003 ~ 8060962 (-) False XLOC_028514
TCONS_00055332 mRNA upstream 127252 8739093 ~ 8779141 (-) False XLOC_028522
TCONS_00055333 mRNA upstream 131714 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055334 mRNA upstream 168338 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055335 mRNA upstream 237975 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055336 mRNA upstream 240169 8852010 ~ 8903240 (-) False XLOC_028524
TCONS_00055328 other downstream 21609 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 468051 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 733573 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055313 other downstream 733587 7870895 ~ 7875930 (-) False XLOC_028507
TCONS_00055311 other downstream 733757 7870736 ~ 7875760 (-) False XLOC_028507
TCONS_00055389 other upstream 2049720 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2994917 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2996355 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3663273 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3801578 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_00597946_00601637.mRNA True 1858 mRNA 0.52 5 CI01000066 597710 ~ 601637 (-)
bowfin (Amia calva) AMCG00006905 True 1788 mRNA 0.55 2 CM030134.1 25336345 ~ 25340058 (+)