RNA id: TCONS_00055332


Basic Information

Item Value
RNA id TCONS_00055332
length 5602
RNA type mRNA
GC content 0.39
exon number 15
gene id XLOC_028522
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8739093 ~ 8779189 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGAACGGCAGTGTAAACACAGAGGAGGATAAAGAGTATCAGCTCTTCCTCTCTCTGCACAGTCCCGCTTTAAAGGCTGCACGAATCCCTCCGCTTTACTGGAAGAGTTTGCATTTAAAACTTGCCAATGAGGTTTTTGATGCCGGTGATGTGTTTGGCATCATGCAAGTGGAGGAAGATGAAGATGGGGATGAGGAGAAAGAAAAGAGACTCAATCCTGGAGATGAGATCGCTTATAAAGTGATTGTGACCAGAGAGAGTGGTCTGCAGGCTGCGGATCCCACCAGTGTGTTTCTGGTCGATCATGCCTGGACATATAGGGTGGAAAGCGCACGTCAGCAGCTTCTGGAGATTCCTGGCCTGCTGATCAGAATGGCCAGTCTAATGTGTTTGCCTTTCCACGGAGAGGCTCCAGATCCAGATATTGTGGATCTGATACTGGACAGCATGTGGAAATACAACCAAACCTATCAGCTATCCCAGGGATCTGCAGAAGAAAAGGTGCCTGTTTGGTACATCATGGATGAATTTGGATCTCGGGTTCAGCACTCTTCACAGCCGACTTGCTGTATGGCTCCTCTGTTTTACGCTCCGCAACAGATTGCTTATTCTGTGCTGTGGCCACTGCAGAACCTGGAATATGGAGATGAGGTGACACGTGATTTTGCGTATGGAGAGACAGACCCTTTAGTCAGGAGATGCCGTCTGCTACCGTGGCTGCCTGAAGAACTGGATGCTGTGAGCGATGACGTGCAGGAACCGTCTGACCTTTACTATGAAACTATTCTACAGGAGAACAAAGAAAAGCTTCCTGTAGACATCCAGCCTTATTGTGTACCAGATGGAAAAGTGCTGAAGGTTTACACTGAGATGAAGCAGGTTTTCGATCATCTGAAACATCCACGCTTCCAGTTCACTGAAAATGAGGAAGAGGCTGACATAATCTGGGCTTTCTCCCATATCCGAGAATATCGGAAACTAAGTGAGGAACGGCCTCATGTTCTGCTCAACCAGTTCCCATGTGAGACGGTTCTTACTACTAAAGACTGCTTGGCGTCTGTGGCGCGGAGAGCTGGGGGAGGTCAGGGGCCCCCATGGCTCCCTAGAACCTTCAATTTACAGACTGAGCTGCCGCAGTTTATCAGACATTACCAGGAGAGGCAAGAGAGAGCGCTGGATAACCACTGGATCTGCAAGCCCTGGAATTTGGCTCGAGGTCTGGACACACACATCACAGACAGCCTCGACTACATAATCAGACAGCGAGAGAGCACACCTAAGGTGGTCAGTAAATATCTGGAGGACCCCGTGTTGTTTCACAGAGAGGAGGTGGGCATGGTGAAGTTTGACATCCGCTACATGGTGCTGCTGCGCTCTGTTGAACCTCTGCGCCTTTATGCATACAACGTCTTCTGGCTTCGTTTTGCTAACAAACCCTTCTCTCTAGATCATTTTGATGATTATCAGAAGCACTACACAGTGATGAATTATGCCGAGGATGTGCAGCTCAAGCAGATTCACTATGATGAATTCATCCCTATGTTTGAGAGCCAGTATCCGCAGTATGCATGGAAGCAGGTTGAGGTGGATATCTTTAGAGCATTTTCAGAGCTCTTCCAGGCAGCGTCCTGTCGTCCCGCTCCATACGGGATCTGTGCGTATCCCTCCTCCAGAGCCATATACGCCATCGACCTCATGCTGAAATGGGACCAGACCGCACAAGggGAACGTGTGATGCAGCCTCAGATACTGGAGGTGAATTTTAACCCAGATTGTAAGAGGGCCTGTCGGTATCATCCCAGCTTTTACGACCACATGTTCCAAACGCTGTTCCTGGATCAGGCAGAAGAATGTCCTATAACGATTCGACTTCTTTACGACCCCACACTTCCAACTCTTCATGGGTCAAGTCTGCCTACTCACATCCCCAAGTGATCCAGGTAACTAATTCACAATTAGTCCTTTGCAGTGGAGAAACCCTAGCAAAGCTGTGAAAGTATCCTGTAAGGTTGTTCAAATGAAACCAGGAGTAAGTGGGGTAAAGATCTAAcagtaaatatttaacaatagCATGTTTCGGTGCTTGCATTGCAGATTAAACAAGCACTGACTAACCCATGGTGTTAAATACCTGTAAATGTACCGGTCATATACATATTAAAGAGTATTTGGCGGCAAATTGGCGCAAATGGTAATGGGGATTGCCCCTCCTTATCACCTTCAAATGGTTGAAAGTATCACTACAAGGCTACTGGAGAATGTTGTTTCCCAGCCCCCATCAAAACATGCAGACAACAGCAAAAGAAAAACTGGCGCAAGCTAAAACGTAGAAAGCATCTCAAGAGTTGATCAATCAGTCTAATTAAGAAGCACACTACTTAATCTAAATTTTCACTAAGCTagtacccagcaagcatttttgtttgtttttaaaatatgtctagTAGATGTCTAAgggacgtctaaacatagtcgtcttggctaaaacaagactaaatttgggctgtcagtgaatgACAAAACTACAGTAGTCATCAGATTAACAGAAATGGATGACTACACatttaaagtctgtctaatcaGTCTTTTTgacaactagtctagttttgggctgttcTTAGTTGTCTATTAGATATTTACTGACAGCCCAGGTTTAGCCTTGTTATAGCTAAGATGTCTACATTTCGATGTCTataagacatctattaaacacaaaattgttagCTGGATACTTTGGCTGCAAAACAAAGTTTGATTTCCATTTAGCAACACAATCATATTGGCTAATTATTTGTTTCTTGGTCTTGCTCTAAAGCAACAGGTAAACAATTGTGAAGCCTTAACAGTTAACAAATGTATGACTTTTATTGCATAATTGGCATTAGGATGAAATATTGGATATCTTGGATAtatactttcatttttgggtataTTTCTGGGTACAAAAACACATCCCCAGTTTTTATACCCAGTGTAAAAAGATTAATGGATGCAAaaactggtggtggatgaagacATTcctcccaaaaatgtgtaaagcgctttgagtgtctagaaaagcactatatataaatgtagggcattatcatcattattattattattattaaaaattaatgaaatgaatgcaaaaatgcaaaaaaaaaaatcataaattttatttaaaaacatttttattgtcacAAATATGTACAGTTTGCATTGAGAGTCAAAATATTTACCAAACACATCAAATAATATAATCAAAAGCACAAAAATCATCCATAAGGATGTGAAAGACTATGTGAAAACGTTTATTGTTGTTTATCAGTGTCACTAGTATTCATGTTTTCTTTACTTTCTATAAATGCTTCTTAACTGGTAAAGCTTTTCCCTATTTCCCTCCTCTCTCCAAAGGAAACTCCACTTGAGTGACCTCATCCTTCAGGAATTTCTGTTGCCGCCTCAGCACAAAGAGCTGTAAGTGAAATTTGAgatgcattcatgtcatgtgaaCAAGCCAAAAGTATACtatcataaaaaaaacatgtaaactccttAGACAATTAGAATTTAGATCACTAGTTACAtgccaaaagaaaaaaacaacaacaacaacaatcagtATTTGTCAAATGGGTTCACACATTTAGATTTTGAACTCCAAATGCCAACCTGAGCTGCAGTCTATTTCTGCTTCTTGAGGCTCGACAAGAGTAATCTTTCAGGTTCAGATGACCTGAAGTAAGTCATTTACTCTGAGACTCGTTTAGAGATGAATAATGCATGAGCATACCAAATGGGCTCTGATGCACAATGTAACCAATGTCAGATAATCGGGTtgaaacaaaatgtacatttattacaCTGTTTTGAATACTCTAGTATCGATAAAAGAATACcataatttcataaataataagCAGTGATATTAGATCACAAATTCCTATTAATTAAAGGATATTTTGACAATCAAGTAAACCCAATTAACTATTAGAGAGAGTTTAGGCTACATTAAAAGTCAAGAGTAATTCAATTAATCAAAGAGTGGAATTAAACTAGGTAAAGTAGAATAAAATAAGCCTTCAAAGTTTTCATTGAGGAACTTTTGGCGTCTTTATTGAACTTCAGAGTTTGTATTTAGGAGTTTTTGGTGTTTTTAATGACTTAAATGAACTTTAGAGTTTGTATTAAGGTTTTTGTTGGCGTCTATAATGACTTCAGAGTTTGTATTGAGGAATTTTGATGTTTTTAATGACTTTAATGAACTTCAGAGCttgtattaaaaacattttgatgtttttaatgattttaatgaaCTTCAGAGTTTGTATTGAGTCGTTTTTTGTGTATTTACTGACTTTCATGAACTTTAAAGTTTGTATAAAGGATTTTTTTCCATCTTTAATGGCTTTAGAGTTTGTATTGAAGATTTTTTGTTGgtgtttttaaatactttaatgaACTTCAGAGTTTGTATTgaggatttttttaatgttttattgactTTAATGAACTTCAGAGTTTGTATTgaggatttttttaatgttttattgactTTAATGAACTTCAGAGTTtgtattgaggattttttttgtgtttataatgACTTTAATGAACTTCAAAGTTTGTATTGAGGAATTTACTGTGTCAATAATGACTTTATTGTGTGTCTTTAATGACCTTATTGCCTTATATGTACTTTATATGAAGTGTGTGATTTTATCACCTTATATTGTATTTCTAACGGTCTTCTCACTATTCTATGTGTGTTTGACTCTGAATCTTATCCCgtgtgtgttttactgtcatATTCTTATCTAAATATCTTATCTGATCATAAAGTAGCCATTGTCGGGTTGACTGTGTTGGGGGAAATTGTcctcaaaaattattttctgagttcataaataaatgaaacaagtcAGAAGTCCTATTTCAACCCAATATGTTGTATAACGGGATTCATATTTCTCACTGTCTGTGGTTTTTATCTCATATTCCCAGTGGCATCCTGCTTCTCTCAGCAAATAATAGACTCTCATCTGTAATTAGGAGCGAATGTATATTGTCTGTCTCTTGTTCTTCTACTTTATGGCTGCACTGCTTAGAGCGTGCTTTTCTGTAAGTTCTTGCTGCTGCTGAATAATGGCTTCTTTATGTTTAAATGACATCAGTGGGAGCTAGTAATGATGTTTAAATGAGATCTGTGAGATATGATGTAGCTGATGCATAGCATGCGCTTATCTCGTCATGAGTTGCATATTATCTGTTGTTGTCTCCATGGTTTTCTCATAGAATTAATAACTATCCTTGTGTTTTATTGGGCATTGTTTCTGTCTTGGTCAGTACATATTTTATCTAAATGCATTGCATACGCTTTATCAATCTGCAGCGCATGCACAAATTCtccttaatatataatatgtgttAAACATTAGATGAATGATTTACTGTGCTTCACTCTTTAGGTTCTGCATGTCTGTGTGTCTCATCAGTCgaagtgtttctgcaggtttttaaaagtttaacctacACTCACGAgccagcaactcaatgtatttatatcatgtagacatggtcaagatgatctcctgcagttcaaaccgagctgACCCCA

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040426-697 Predicted to enable ATP binding activity. Predicted to act upstream of or within cellular protein modification process. Orthologous to human TTLL12 (tubulin tyrosine ligase like 12).

Ensembl:

ensembl_id ENSDART00000182314

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055331 lncRNA downstream 3502 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055330 lncRNA downstream 100464 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00057326 lncRNA downstream 519102 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00058062 lncRNA downstream 524658 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00058061 lncRNA downstream 765758 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058063 lncRNA upstream 125150 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00058064 lncRNA upstream 128588 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058065 lncRNA upstream 195976 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055340 lncRNA upstream 195977 8975118 ~ 9008778 (-) True XLOC_028526
TCONS_00058066 lncRNA upstream 269165 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00055329 mRNA downstream 127252 8609517 ~ 8611841 (-) True XLOC_028519
TCONS_00055321 mRNA downstream 583522 8045564 ~ 8155571 (-) False XLOC_028514
TCONS_00055322 mRNA downstream 586347 8047291 ~ 8152746 (-) False XLOC_028514
TCONS_00055324 mRNA downstream 586347 8048916 ~ 8152746 (-) False XLOC_028514
TCONS_00055326 mRNA downstream 645340 8087704 ~ 8093753 (-) True XLOC_028514
TCONS_00055334 mRNA upstream 1038 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055335 mRNA upstream 70675 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055336 mRNA upstream 72869 8852010 ~ 8903240 (-) False XLOC_028524
TCONS_00055337 mRNA upstream 119619 8898760 ~ 8902406 (-) True XLOC_028524
TCONS_00055338 mRNA upstream 127752 8906893 ~ 9008851 (-) False XLOC_028526
TCONS_00055328 other downstream 151185 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 597627 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 863149 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1882420 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2827617 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2829055 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3495973 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3634278 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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