RNA id: TCONS_00055334


Basic Information

Item Value
RNA id TCONS_00055334
length 1891
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_028523
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8780179 ~ 8795250 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTGAACAACATCAACAACCGCTCCTTTCTGCACCGAGGCGAGCAAAACGGCTTTAAAAGACATGATAGTCTGAGATTTAGCCGCAGTCATGTTTGATTTGAAAGAAGGCTGGAATCTGTCGTTCGCCGGATGCGGGTTTTTGGGGATTTATCACATCGGTGTGGCGAGCTGTTTGCTGGAGCAGGCGCCCTATCTGATCCGCGGGGCCACGAAGATCTACGGAGCCTCGGCAGGGGCTCTTACTGCCTCCGTGCTCACTACAGAGGCTTGCATAGAGAAATGTTGTGAAGACGTCATCAATGTTGCCAAGGAGGCACGCAagcgtaatctGGGCCCTTTGCACCCAACATTCAACATAGTCAAGGTGATACGTGGAGGCCTGTATCGCGACCTGCCGTCCAATGCACACACACTCTCCTCTGGACGACTCTGTGTTTCGCTCACACGCGTCATGGATGGCCAAAACGTCCTGGTGTCTGACTTCAGCTCCAAAGAGGAGCTCATCCAGGCTCTCATCTGTAGCTGTTTCATTCCTGTGTATTGCGGTTTAATCCCTCCTGCCTTCCGTGGTGTGCGTTATGTGGACGGCGGCATCAGTGATAATCTGCCCCAGTCAGAGCTGAAGAACACCATCACTGTTTCTCCATTCTCTGGAGAGAGCGACATCTGTCCAAAAGACAATTCCACCAGCTTCCACGAACTGCGTTTCACAAACACCAGCATTCAATTCAATCTGGACAACGCGTACAGACTGAGCAAGGCCCTGTTTCCCCCAGAGCCTAAAGTGCTGGCAGAGATGTGTCAGAGCGGGTATAAAGACGCCCTACGGTTTCTCCAGGAAAACAATTTGCTACAGGCAGCATGTCCAGGAGTAGACATGGCTCTGATTCAGGCCACACCAACCTGCTGCTGCCCTGGGAAGAAGAATCCAGTGGTGGAGGAAACGACCAAGGAGTGGGTCTTGCGGAGGCTCCGGCTCTTGAGGAAACACCACTGGTGGCTGGATGAACAGATTGTTGATAACCTGCCAACACCTATTAAGAAAGttttttgcGACGCCTGCAGAGAAAAGCACGGTCTGCTGGCACAGGTGACTGGTTTGCTGCCAGTGCGTGTGGCGTCTTATATGCTGTTGCCGTACACACTGCCAGTGGAATCCGCTTATTCTGCAGCTCAGAGGTTTTGGGAGTGGATCCCAGAAGTCCCTGCGGATGTGCGCTGGCTTACTGAGGTGGCAGGAGGTGTTTACAGATTGGCTTGGAAAGGTGCAGCATCAGAAGCAAACAGCGGCGCCCCCTTGAGAAGATGTGTTAGTGAACCACCAATGGCGGATTTACAGATGCCCATCAAGGACTGCACTGGACACATACCTCATTCTGCAAGCACCCTTGATAGTTACAAGTGGACTTTTCCTAACAACATCCATACAACTTCCTCTATCGACTGTCCAGAAAGTCCTGTCAGTGAGTCCAGGCAGATGAGTTTCTTTGTTGGCTCACCAAATAATTAAGAGAAGCAAATGGACCAATGCTGGGGCTTAgtaaatatacatgtatacatgACTGCCCTGGTTATATACAAGTCATTCTGCATATTTTGGCAGTGGGAAAGACAGTTTGTGTAGACAAAATCTTTGGAATCCAGCGCCGAGTGTAAATATACATGACATGTCAAGCACTCCTATTGTGACATTTTGGACGTTCTCCAAATGTGCCTTTCGTCTTTATTCAGAACCAAAGATGTGTTGATCTGTTGTATCAGCCTATGTACTGTGGACAGTTTATGCCAGAGTTTACATTGCAAGTGGTGCTAATACTTCTCTGCGACCTCAGAATACTTTAATATGTGCCATACAAGTCCATGCCACCAATAAAGAGATTAAGACAATG

Function

GO:

id name namespace
GO:0010898 positive regulation of triglyceride catabolic process biological_process
GO:0006629 lipid metabolic process biological_process
GO:0055088 lipid homeostasis biological_process
GO:0001889 liver development biological_process
GO:0019433 triglyceride catabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005811 lipid droplet cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004806 triglyceride lipase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism

ZFIN:

id description
ZDB-GENE-040718-27 Predicted to enable triglyceride lipase activity. Acts upstream of or within liver development. Predicted to be active in cytoplasm; lipid droplet; and membrane. Human ortholog(s) of this gene implicated in coronary artery disease; fatty liver disease (multiple); liver disease (multiple); and type 2 diabetes mellitus. Orthologous to human PNPLA3 (patatin like phospholipase domain containing 3).

Ensembl:

ensembl_id ENSDART00000169823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055331 lncRNA downstream 44588 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055330 lncRNA downstream 141550 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00057326 lncRNA downstream 560188 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00058062 lncRNA downstream 565744 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00058061 lncRNA downstream 806844 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058063 lncRNA upstream 109041 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00058064 lncRNA upstream 112479 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058065 lncRNA upstream 179867 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055340 lncRNA upstream 179868 8975118 ~ 9008778 (-) True XLOC_028526
TCONS_00058066 lncRNA upstream 253056 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00055333 mRNA downstream 990 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055332 mRNA downstream 1038 8739093 ~ 8779141 (-) False XLOC_028522
TCONS_00055329 mRNA downstream 168338 8609517 ~ 8611841 (-) True XLOC_028519
TCONS_00055324 mRNA downstream 627433 8048916 ~ 8152746 (-) False XLOC_028514
TCONS_00055326 mRNA downstream 686426 8087704 ~ 8093753 (-) True XLOC_028514
TCONS_00055335 mRNA upstream 54566 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055336 mRNA upstream 56760 8852010 ~ 8903240 (-) False XLOC_028524
TCONS_00055337 mRNA upstream 103510 8898760 ~ 8902406 (-) True XLOC_028524
TCONS_00055338 mRNA upstream 111643 8906893 ~ 9008851 (-) False XLOC_028526
TCONS_00055339 mRNA upstream 111897 8907147 ~ 9008846 (-) False XLOC_028526
TCONS_00055328 other downstream 192271 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 638713 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 904235 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1866311 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2811508 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2812946 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3479864 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3618169 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_00730057_00737661.mRNA True 1809 mRNA 0.49 9 CI01000066 729715 ~ 737661 (-)