RNA id: TCONS_00055335


Basic Information

Item Value
RNA id TCONS_00055335
length 2914
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_028524
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8849816 ~ 8903240 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAATGCATTGTTAATGTATCATTACCCAAACTCTATCACAACAGCTGCTTTCTCTTTCCTCAGGCACTCTGCCCTACGAGATAAAAATCGTCATCGCCGGCAACCACGAGCTGACGTTCGACCAGGAGTTTATGGCCGACCTGATTAAGCAGGATTTCTACTACTTTCCCTCAGCCTCCAAACTCAAGCCGGAGAACTATGAAAACGTGCAGTCGCTGCTCACCAACTGCATCTACCTGCAGGACTCTGATGTGACCGTCAGGGGCTTCCGCATCTACGGCTCACCCTGGCAGCCATGGTACTACGGCTGGGGTTTTAATCTACCACGAGGACAAGCTCTGCTGGACAAGTGGAATCAGATCCCAGACTCAACGGATATTCTTCTCACACACTGCCCTCCTCTGGGGTTTTTAGACTGGGTGCCCAGAAAGATGCAGCGTGTTGGCTGTATGGAGCTATTGAACACCGTCCAGAGGAGAGTTCAGCCCAAACTGCATGTATTTGGACACATTCATGAAGGCTACGGTGTGATGACTGACGGAACCACCACATTTGTTAATGCCTCTGCGTGCACAGTGAACTTCCAACCTATGAACCCGCCCATCGTTTTTGACCTGCCCAATCCCCGGAGCTCATGATTGAACTAAGACCCGCCCCCTTCCTTTAATCAGGGTCTCGTTTTGAGCGTGTACGGATGCTGTGTTGTGTATATAAAGTGGGGCGAGAGATGCTAATTTGGATATTTCCAAGGATATTTACATCCATTTTTTTTTGTGCCATGTGACACACACGGGACATTTGAACTCTTTTTCTGAATTGAAATCTTACGTTGCACTTGAATCGGCGTGACAATCGTGTGTACTTCAAAGTCATGGAAGCCAATCAGTGCTTGGATGATGGGAAGTCAAGCATTTCCTCATTATAAGGCACTTATTTAAGGAACTTTGTAACCTTGTAGCCTCAATGGACCTCTGGTTAGCTCTGGATCCGCTCTTGAAAGTTACAGGATGTGTCCAGGGGAAACTGCGCTATGGTGCAAAACAAGTTTGTTCAGGGTCTTTAACattttcctctttctctcgctctctctttctcagagTCTCAGTCTTTCATCCTACTTTTTCCTATCGGCTCTGTTGTTATATGTTGCTCTTTTGAACTTGGGGCCATGTTGGATCATTTACTGAgagaaatacatttaatacacCCTGAACAACAGGAATGtactattttaaatattgatggtaaaaaaaagaaacaaaaaaaaaatgtccctgTGTTCTCCACTTTTCCATGCCTTCTTTTATTGTTCGATTTACTGTAAACTGTGTAAAACTGTGAGTGTGTTTTCAAGCAAACGGTCCTTCGCCAAAGCAGCGTGGACTTTCTACAGTAGTTTGAAGTGTTTGTTTAAGGTCAAATATTTAAAAGTTCTTCTAAAGCGCCGTCGCTAGCGTCCCTCCTCCGAATATCAAAGACTCGTCATGCAGGCGAAGTGCGCTTTTTGCATTACAAGAATATGTTGCACTTTGATCCACATGCTCCCCACTATAATTTATTAACATTCCTCCTGGCGATAATTTACTCCCATGTGTTTTACAGCTCTTCAGCATTAACTGTGTGTGGCATTAGGCCTAATATGACGGTTCTGTAAGATGTGCAGAGGGTTTTCATCTCCTCCATATAAGTGGgtgaataaaaatgaacaaatcgaACAAATTATcactctgcgtgtgtgtgtgtgtgtgtgtgcgcgcgtctgTGGGCTCCTGCGTGTGTGAACGCGATCAATTGCTTCTCTTTCATAGCCTGAGGAAAAGAAAGAATCAGAGGACGGAGAGATCGaagagataaaaagaaaaaatattggaAACGCCAACTAGGAAGGATGAGCTGATGTCTGGGAGAcggatctttatttttttatttataagggtttttttgctgtttgtgcACTTGTTTGCATTTGGTCAGAGGTGCTTCACGGTCTCTTGTGGCtttcctctgttttttttttccctcactcTGTTCATTCATGCCCGTATGTGGGCCTTTTCTTTGAAGACGTTGTCATCAGGTTTACTGCTGTGCTCCAgttatttttttcacagcatGCTGTTCTGAATTGCCAAACCTATTTTGTGGGTTGTTTGTTAATTCATTGTGTTGTGAAATTTCAGTGCTAAAGATATGATTTGGGAGTTTTTATCTATTACTTTTGGTAGATtcattttatgccatttttaaacTTCATGGTGTTAAATAAATTCTACCAGAGATGAAATCTCTTTCTAAATCTTCTATCTctttctaaatttttttttacatttttttggtcaCGATCGTTTGTAAATAAGTTCACACTGATATTTATGCACCAATATTGCATCGAACAAACTCAACAAGTGTTTAGAAATGTATGGCTTCAATGTGAAATCACTCCAAAATGAAGAAGTTACATCATGTGAAGATATGTAAAGATAAAGGCATTTCATACAGTAAAAATGCACTTTTCACATGTTCATATTGGGAATGTAATGTTACAGAATTTTAGAATAAAAGGTCCTACttcatattaagtggccttaacttaAATATACAGTACTTACACTGGAATTAATAATTTGCTACAAAGATCTTTTTGTGTAAATCCATGTTTTTACATtgcacttatgcttgattaaatacctgcatgtaactACAACTGTAATTAATttgtgtaattacatttataattacattgTTTACGCACCCTTAATACTACCCAGACCAAATCTGTTCCTAACCTTATGCATATACCACCTCAACAGCACCAGAAGAGTTCTGCAATTCATTATAAACACATTAAGCACATTGTTTTTATCTTCTGGTGTAAGTGCATATTAGTTAATGAtaactaatataaagtgggac

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111104-1 Predicted to enable hydrolase activity. Is expressed in Purkinje cell. Orthologous to human MPPED1 (metallophosphoesterase domain containing 1).

Ensembl:

ensembl_id ENSDART00000190060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055331 lncRNA downstream 114225 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055330 lncRNA downstream 211187 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00057326 lncRNA downstream 629825 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00058062 lncRNA downstream 635381 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00058061 lncRNA downstream 876481 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058063 lncRNA upstream 21719 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00058064 lncRNA upstream 25157 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058065 lncRNA upstream 92545 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055340 lncRNA upstream 92546 8975118 ~ 9008778 (-) True XLOC_028526
TCONS_00058066 lncRNA upstream 165734 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00055334 mRNA downstream 54566 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055333 mRNA downstream 70627 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055332 mRNA downstream 70675 8739093 ~ 8779141 (-) False XLOC_028522
TCONS_00055329 mRNA downstream 237975 8609517 ~ 8611841 (-) True XLOC_028519
TCONS_00055326 mRNA downstream 756063 8087704 ~ 8093753 (-) True XLOC_028514
TCONS_00055337 mRNA upstream 16188 8898760 ~ 8902406 (-) True XLOC_028524
TCONS_00055338 mRNA upstream 24321 8906893 ~ 9008851 (-) False XLOC_028526
TCONS_00055339 mRNA upstream 24575 8907147 ~ 9008846 (-) False XLOC_028526
TCONS_00055341 mRNA upstream 169016 9051588 ~ 9054947 (-) True XLOC_028528
TCONS_00055342 mRNA upstream 220610 9103182 ~ 9173552 (-) True XLOC_028529
TCONS_00055328 other downstream 261908 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 708350 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 973872 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1778989 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2724186 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2725624 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3392542 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3530847 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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