RNA id: TCONS_00055337


Basic Information

Item Value
RNA id TCONS_00055337
length 1104
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_028524
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8849816 ~ 8903240 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCATAATCCATCTTTTAGCTATCTTTCTACATGTAActcaaaagaaataataataaaaaaaaatgtttctaaatggtttgaggacttgtgtTTTTCACAGAATGGAGTGGAAAGCTTTCAGCTCTTTTCCTCCTAGTTATTTCagttcaaaaaaacattttagctcCTCTTTCTCTTCAGAGGGCTTTTTGTGTCCTCTTTCTTCCCAAACAATTGTCTCTGTTGAGtcgcatcttttttttttttttcttgccgtCTTGAAAGTGCAGGGAACTCTATTGTTAGACACAGAAATCGTGACAGAATGGTTACCATGGCTTTGTGTAAGATCTTGTCGCTAACACACAGGAGAGTGGGACATACCGCCGTCAGCTGCACATCTGATTGTGGGTTTTGATAATAAGCCGCTGTCACTGCTCGCATCTCCCTTTATCTTGTATCTCCTACCTTTTTTTCCCGCAGGTGTATTGTGTCCGCTGGTGTATTGTGATTGAGGGGAAGCATGCAGATTCAATATCCCAGCAGCAAAGCCATACGGTGGACCAGCCACTGAAGACGGTCCCTAAACTGTCCCAAAGACTTGCACAAGACATCCAAAAGTGGAATCCCTTTAAACCAAACACCTACGGACAAGTGTGGGTGTGTAAGAAACAAcagagacagtgtgtgtgtgtgtgagtgtgtgtgttttgccaTGGCCTTCACACTTTCGGAAATCATGGCAGCCCGACGACAGCAGCAACAATCTCAGAGAGGAGGACGAGGAGTGGTAGAGGTGGACGAATACAGCGCCAACCCGACTCAAGCCTTCACTTTCTACAATATCAACCAGGGCCGCTTCCAGCCACCCCATGTCCACATGGTAGATCCTATAGCCCACGACACCCCCAAACCCCCGGGCTACACGCGGTTTGTCTGTATCTCCGACACACACTCGCGCACTGACGCTATTCAGATGCCGTACGGTGACGTCTTACTGCACGCTGGAGACTTCACAGAGCTCGGCCTGCCCAGTGAAGTCAAGAAGTTTAACGACTGGCTTGgtgagatgtgtttttttttttcattctcttccTTAATTGTATTTTACCGTGCTGTATGCGT

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111104-1 Predicted to enable hydrolase activity. Is expressed in Purkinje cell. Orthologous to human MPPED1 (metallophosphoesterase domain containing 1).

Ensembl:

ensembl_id ENSDART00000192962

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055331 lncRNA downstream 163169 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055330 lncRNA downstream 260131 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00057326 lncRNA downstream 678769 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00058062 lncRNA downstream 684325 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00058061 lncRNA downstream 925425 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058063 lncRNA upstream 1885 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00058064 lncRNA upstream 5323 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058065 lncRNA upstream 72711 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055340 lncRNA upstream 72712 8975118 ~ 9008778 (-) True XLOC_028526
TCONS_00058066 lncRNA upstream 145900 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00055335 mRNA downstream 16188 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055334 mRNA downstream 103510 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055333 mRNA downstream 119571 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055332 mRNA downstream 119619 8739093 ~ 8779141 (-) False XLOC_028522
TCONS_00055329 mRNA downstream 286919 8609517 ~ 8611841 (-) True XLOC_028519
TCONS_00055338 mRNA upstream 4487 8906893 ~ 9008851 (-) False XLOC_028526
TCONS_00055339 mRNA upstream 4741 8907147 ~ 9008846 (-) False XLOC_028526
TCONS_00055341 mRNA upstream 149182 9051588 ~ 9054947 (-) True XLOC_028528
TCONS_00055342 mRNA upstream 200776 9103182 ~ 9173552 (-) True XLOC_028529
TCONS_00055343 mRNA upstream 282075 9184481 ~ 9196291 (-) False XLOC_028530
TCONS_00055328 other downstream 310852 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 757294 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1022816 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1759155 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2704352 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2705790 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3372708 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3511013 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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