RNA id: TCONS_00058063


Basic Information

Item Value
RNA id TCONS_00058063
length 712
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_028525
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8904291 ~ 8905453 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTATTACATAGTAATTAATTACAAATCACCTTTGTGCTGTGCACAAAGACACATATTTTGctcttgtttttgaactgtggatGAAGAAAAGAGGCTGTTTGTTGAACTGATGAAATATCTGAAGTATTTGAATGTTGACTTGCTCAGATTGTTTCACCTCATAAATCAGCAGAATGACCATGTTGGAAGCCAAAAAATACTATCAGAGAAAGGCACGTGACTGTttgaagaaagaagaagaatgtATGACATGAAATcgacttatttacacacacacacaacgtgaTCTCAAAGTACTTTGCCCCTCAGATGGAGAGAGTGAATCAGACTGCTGCTGGAGCGAATTGTAAGCTTTATGAATTCAGATGTGTAAATGATGTACAAAtggtagtgttttttttattcttaagtTAATATTTACAGTAGAATGAGCCATTATGATGGGGAAGATGACAGTCTAACATGTACATGACTGCTCTGGAAGGCTCTGTTGAATAGTATGATTCCCGCAACGGTAAATGACCACAGTACAGAAGAATGAACAATTCAGCAGTGTGAAATCAACCCCAGAAGATGTGTATAAGAGAATGGAAACTATTGTTAAGACCtcactttattaataaatcattcaaatcCCATGTTGTGGTTGTTTTATTGTACTTTGTCATTTCTCTTTTATTAAAATGCATTGGCATATTAAGGAATAAAGT

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055331 lncRNA downstream 168700 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055330 lncRNA downstream 265662 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00057326 lncRNA downstream 684300 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00058062 lncRNA downstream 689856 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00058061 lncRNA downstream 930956 7971682 ~ 7973335 (-) True XLOC_028508
TCONS_00058064 lncRNA upstream 2276 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058065 lncRNA upstream 69664 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055340 lncRNA upstream 69665 8975118 ~ 9008778 (-) True XLOC_028526
TCONS_00058066 lncRNA upstream 142853 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00055345 lncRNA upstream 284521 9189974 ~ 9192445 (-) True XLOC_028530
TCONS_00055336 mRNA downstream 1051 8852010 ~ 8903240 (-) False XLOC_028524
TCONS_00055337 mRNA downstream 1885 8898760 ~ 8902406 (-) True XLOC_028524
TCONS_00055335 mRNA downstream 21719 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055334 mRNA downstream 109041 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055333 mRNA downstream 125102 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055338 mRNA upstream 1440 8906893 ~ 9008851 (-) False XLOC_028526
TCONS_00055339 mRNA upstream 1694 8907147 ~ 9008846 (-) False XLOC_028526
TCONS_00055341 mRNA upstream 146135 9051588 ~ 9054947 (-) True XLOC_028528
TCONS_00055342 mRNA upstream 197729 9103182 ~ 9173552 (-) True XLOC_028529
TCONS_00055343 mRNA upstream 279028 9184481 ~ 9196291 (-) False XLOC_028530
TCONS_00055328 other downstream 316383 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 762825 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1028347 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1756108 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2701305 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2702743 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3369661 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3507966 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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