RNA id: XR_005040221.1


Basic Information

Item Value
RNA id XR_005040221.1
length 1359
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118944845
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 3970352 ~ 3972045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catattctaagtccgaaccgtccagagtagtgacgctggacgggcgggcaggtatgggcagcgatcggttgattTAATTTTACTTGCATtcacagtttttctcaattgctaaaacactaaaacccattggctgaacaaagttctcagttgcctggactcatttagctaattatgcagtctgttatcagtaccttaaaccatttcacatggtaaaacacaattttcagATCTCACTTAGTCTTTTCAGCAAAACtataaacacattctcattctcaaaacacattctgcactctaatgcacatgtcatccatactggtaaacacaagtggcaatcAAATACAAGTAGAGAAGACATGTCATTGATTCAACACAagcactcaaaattgatttaacctgtttcaaatgatgcgacacaacctatataagccagttcagagagcaaacaggatgttgaaggtgggaaggagaaagtctgagaatggatagaagAAACAATGTGAGAGGACGAGGACGAGTGCGTATGCGAGGTGGGCGACAAGGAGGAGGGCAAgaaagacgaagaggaggacgaagaggaagaggaagacaaagagtggAAATATCTGATAAAATTCAAGCAACAGTTATAGACCATGTTCTTGTCCATGGACTGACAATGAGGGAAGCAGGACTTAGAGTGCAACCCAATTTGAGCCGATTTTCTGTGTCCACCatagtaaggacattcagagaagagaacagAATTGCAAGGTTGCCACATGCAGGTGGAAGGACAGCTATATTCACTCAGCAGCAAGAGGCCCTTATAGTTGGCATGGTCCTTCAATACGACTCAGAGAAATCCAGGAACGAGTGatacaagacaacacacacttcCAGGGAATTGACAGTGTGAGCATTTCCACAATTGACCGTGTCCTCCATCATAACAGGATGCGAATGAAACAAGTATACAGAGTACCTTTTGAGCACAACTCACCAAGGGTGAAAGAACTGCGAGCTCAGTATGTACAAGTACTacaatatttgacttGGAATCCTTGGACAGACCCCATGAGTTCATCTTCGTCGATGAAGCAAGCTTCAATCtaacaaagaggagaaggagaggccaAAACATGATTGGACAGCGGGCCATTGTTGAAGTCCCTGGTTAACGAGGTGGCAATGTCACAATCTGTGCTGCAACCATGGTGTTCTACATCATCATGTTAGGCCATATAACACCCAGCACCTTCTAAGACTTATTGCCAATCTAAGAGATAttttatttgagcagcaggttcaagagcagcagggtcaagagctaaatgagaatccaattcccacctatgtgatagtgtgggacaatgtcagttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2398109 lncRNA upstream 10253 3958641 ~ 3960099 (+) False G2096499
TU2398111 lncRNA upstream 10253 3958641 ~ 3960099 (+) True G2096499
TU2398105 lncRNA upstream 13758 3956334 ~ 3956594 (+) True G2096496
TU2398101 lncRNA upstream 19663 3950482 ~ 3950689 (+) True G2096492
TU2398100 lncRNA upstream 21811 3948161 ~ 3948541 (+) True G2096491
TU2398159 lncRNA downstream 118351 4090396 ~ 4090613 (+) True G2096546
TU2398472 lncRNA downstream 118880 4090925 ~ 4091262 (+) True G2096790
TU2398486 lncRNA downstream 128783 4100828 ~ 4101145 (+) True G2096804
TU2398488 lncRNA downstream 130716 4102761 ~ 4102983 (+) True G2096806
TU2398529 lncRNA downstream 209159 4181204 ~ 4181431 (+) True G2096846
XM_021588846.2 mRNA upstream 155462 3797542 ~ 3814890 (+) True LOC100653486
XR_005040226.1 mRNA upstream 178753 3790194 ~ 3791599 (+) True LOC110508367
XM_021588842.2 mRNA upstream 183718 3776296 ~ 3786634 (+) True LOC110508366
XM_036965961.1 mRNA upstream 261700 3701897 ~ 3708652 (+) True LOC110508363
XM_036967071.1 mRNA upstream 266585 3696204 ~ 3703767 (+) True aknad1
XM_021588848.2 mRNA downstream 288662 4260707 ~ 4280126 (+) False LOC110508370
XM_021588847.2 mRNA downstream 288668 4260713 ~ 4280126 (+) False LOC110508370
XM_021588850.2 mRNA downstream 288669 4260714 ~ 4280126 (+) False LOC110508370
XM_021588849.2 mRNA downstream 288673 4260718 ~ 4280126 (+) False LOC110508370
XM_021588852.2 mRNA downstream 288924 4260969 ~ 4280126 (+) False LOC110508370
TU2398079 other upstream 52367 3899586 ~ 3917985 (+) True G2096472
TU2398082 other upstream 62481 3887380 ~ 3907871 (+) True G2096475
TU2397376 other upstream 628833 3341184 ~ 3341519 (+) True G2095895
TU2396861 other upstream 1063147 2900850 ~ 2907205 (+) False yeats2
TU2396296 other upstream 1315261 2653863 ~ 2655091 (+) True G2094884
TU2398731 other downstream 564031 4536076 ~ 4536894 (+) True G2097031
TU2399068 other downstream 739427 4711472 ~ 4714289 (+) True slc17a9b
TU2400540 other downstream 1996516 5968561 ~ 5998314 (+) False G2098625
TU2400795 other downstream 2117683 6089728 ~ 6090062 (+) True G2098849
TU2400814 other downstream 2151683 6123728 ~ 6157102 (+) False LOC110509204

Expression Profile