RNA id: TCONS_00055338


Basic Information

Item Value
RNA id TCONS_00055338
length 4038
RNA type mRNA
GC content 0.46
exon number 23
gene id XLOC_028526
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 8906893 ~ 9008851 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCGCAAACCAATCAGCGGCGTCCGGAGTCTCGAGCTGTGGTGCTCGCTCTGCCAGCAGCAGCAGAAAGGCTGCTTATCAAAGAAACGCACAACTGGAGAGACCCATTCACTCACAGCCTCTAACCATGGGTCCTGCCTGCTTCTCCTGGGAAGTCTGTTTGCTTTTCCTCCTCATAAATACTTTAGATGTCATGGGAAATGTTGGAGTCCCAGATGCTGACGAGTGCTCTGAAGCCACAGACGACTGTCACATCGACGCTCTCTGCCAGAACACTCCAAAGTCCTTCAAGTGCATCTGCAAGACCGGTTACAAAGGAGATGGCAAGCACTGCGAAGACATTGACGAGTGTGAAAACGACTACAATGGTGGATGTGTTCACGACTGCATTAATATCCCTGGGAACTATAGGTGCACTTGCTATGATGGATTCATGCTGGCAGACGACGGGCACAACTGTCTTGACGTAGACGAATGTCTGGACAACAACGGCGGATGTCAGCAGATCTGCGTCAACACTATGGGCAGTTATGAGTGCCAGTGTAAAGACGGGTTCTTCCTGAGCGACAACCAGCACACCTGTATCCATCGCTCCGACGATGGGATGAACTGTATGAATAAGGACCACGGTTGTGCCCATATCTGCAGAGAAATTACCAAAGGCGGAGTGGCGTGTGAGTGCCGGCCAGGGTTTGAGCTGGCCGAAAATCAGCGCGACTGCAAATTGACATGTAACTATGGAAATGGTGGTTGCCAACACACGTGCGACGACACTGACGTGGGGCCCATTTGTGGATGCCATCAGAAATATGCCCTGCATTCAGACAGCAAGACCTGCATTGAGAAAGATGAGGCTGCAATTGAGAGCTCTGAATTCAATACCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGTCGTCTACTTATGGAGACCTGTGCGGTGAACAACGGCGGCTGCGATCGCACTTGCAAGGACACGGCGACTGGTGTCCGCTGCAGTTGTCCCGTGGGCTTCACCCTTCAACCCGATGGCAAAACCTGCAAAGATATTGACGAATGTTTGGAGAATAATGGGGGTTGCGATCATTTCTGTCGTAATACTGTGGGCAGTTTTGAGTGCAGCTGTCAGAAAGGACACAAACTTCTGACCAATGAGCGCACCTGTCAAGATATTGACGAGTGCTCCTTTGAGAGGACGTGTGATCACGTCTGCATCAACTACCCTGGTAGCTTTGAGTGTGTTTGCCACAAAGGCTACAGTCTCTATGGCTTCACACACTGCGGCGATATTGACGAGTGCAGCATCAATAACGGAAGCTGTGAACACGGCTGTGTGAACACACCGGGCAGTTACGAGTGTGTGTGTCCTCCTGGACAAAAGCTCCACTGGAACAAGAAAGACTGTGTTGAGGCGGTAAAATGCCTCCAGAATGGAAAACCGCCACCACGTGCTCAACTCAGCTGCACTAAGACAGGTGGAGGAGAGGTGTGTTCACTTTCCTGTCCATCAAACGCACTCTTTCTAGCAGACTCAGAAAACAGTTATACACTGAGCTGCGGTGTACCTGTCCAGCCAGGTAAAGCTCCACTGAAGAGAAACATCACAACTTCCAGCAGCAGCTCCCTGCAAACCTGCACAGAGATGCTGGCGCAGCCTGTGAAGCAGAAAGCCCGCTTTAAGATCAAAGACGCCAAGTGCCACATGAGACCCCGCAACAAGGAGAAACACAGAGACATGGGGAAGCAGGGCCTTCAGGCTGGCCAGTTCCCTTGCACAGACGACTGTCAGGTAACATTTGTGAATCTGAAGTGCGACTCTTCCAAAAAGCGCCGTAGGGGCCGGAAATCTCCCTCAAAGGAAGTCTCGCACATTACAGCAGAGTTTGAGATGGAAATGAAAGAAGAAGAAGCCTCAGaATCATGCAACTTGGACTGCGTTCGCGAGAAAACCAAACAGCGATTACAGAACGCCATGCGCACACTAAGAAAGTCCATCAGTAAGCAACAGTTCTACATCCAGTTTTCTGGCACCGCATATGAAGTTGCCCAGCATGCTTTACGACATACGACTGAAGGAGATGAAACCTGCAGTATAGGACAGGTCTTTACCGATGGGAAGTGCGTCAGCTGCGTTGTGGGAACATTTTACAGTGGAGAACAGGAACAGTGCGTCATGTGTCCTCTTGGAACCTATCAAGACAGGGAAGGCCAGCTGTCCTGCGAGCCCTGTCCCAGAACTGAAGGACAGGGCATCGCAGGAGCCAAAAACGTCTCTGAGtgcggagGTCAGTGTCCAGCCGGTCAGTTCTCTTCTGATGGTTTCCGCCCATGCCAACCATGTCAGCTGGGCACCTTCCAGCCTGAGCCAGGCCGTGTGCTGTGTTTTCCCTGTGGCGGAGGACTCATGACTAAACACACCGGCAGCACATCATTTAGAGACTGTGAAGCCAAAGTTCACTGTGCTCTTGGCCATTATTATAATGCCACCACACATCGGTGCATCCGCTGTCCAGCTGGTACCTATCAGTCTGAATCCGGACAGAACTACTGCATCACCTGCCCTGGAAACACCACTACAGATTTCGACGGCGCTAACAACGTGTCTCACTGCAAAAATCAGATATGTGGTGGAGAGCTGGGCGACTTCATGGGCTACATCGAATCTCCGAACTATCCCGGTGACTATCCATCTAATGTGGACTGCGTCTGGACCATTAACCCTCCAAACAAAAGGCGGATCCTTATTGTTGTACCAGAGATCTTCCTCCCCATCGAGGATGAGTGCGGGGATGTTCTCGTCATGAGGAAGAGTGcCCTGCCCACTTCCATTACAACTTATGAGACCTGCCAAACTTATGAGCGACCGATCGCCTTCACCTCCCGTTCACGCAAACTGTGGATCCAGTTTAAATCCAATGAGGGTAACAGTGGAAAGGGATTTCAGGTTCCATATGTCACTTATGATGAAGATTACCAGCAACTCATAGAAGACATTGTTCGAGACGGTCGACTATATGCCTCAGAAAACCATCAGGAGATATTAAAAGATAAGAAGCTGATTAAAGCTCTGTTTGACGTACTGGCTCACCCTCAAAATTACTTTAAATACACTGTGCAGGAATCAAAGGAAATGTTCCCACGTTCCTTCATCAAACTGCTACGTTCCAAAGTCTCAAGGTTTCTACGGCCGTATAAATAGAAACCCGAAACTCTGATCCACGACTTTCTTTCCTCATCTCTCTTCCACCTCTTTTTCTCCACTAGCTTTCAGAAGGCCTCACTACTGCAAGAAGATAAAGACATTTGGCCTTCTTTCTCTCTGAGATTTGTCcccttttttgtctttgtttgctATAATTTATGTGCTCGATTTTGCGAAAGCCCTTGTTGGATGTTTGatatctacagtatatatatatttgtatatgtatgtatttatatatgtgtgtgtgtttgcgtgtacaAAATATGATGTGCAAGTTTATGGCATAGTAGTaggacacaaacagacacacacagatatatattcTTGTTTCAAAAACGTCATTTTCATGCCCCTGATGTGCACAAGGGGTTtcaatatggagccagatcagtctcaaaaataagcATTTACAAATATAATTCATACGTTCTAGacaatttgtaaatacatgcAAAAACATGTATTTCATGATTCATATATAACACAAATCCAAGTCGTGAATTAAAAATTATGATTCATAAATactcaaatccaattcataaattcaaaataagaTTCATAAATactcaaatccaattcataaattaaaaatacgataaaaaatacacaaatccaatttgtaaattcaaaacacgattcaataatacacaaatccaattcgtaaattcaaaatatgcTTCAAAAATACACTAaggcaattcgtaaattcaaaatatgattcCTAAATCtaaaaatccaattcgtaaattcaaaacatgattcaaaaatacacaaatccaatttggaaattcgaaacacgattcaaaaatacactaaGGCAATTCgtaatt

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050302-78 Predicted to enable calcium ion binding activity. Acts upstream of or within cell surface receptor signaling pathway; muscle cell development; and primitive hemopoiesis. Located in plasma membrane. Is expressed in several structures, including axial chorda mesoderm; blastomere; central nervous system; optic cup; and solid lens vesicle. Orthologous to human SCUBE1 (signal peptide, CUB domain and EGF like domain containing 1).

Ensembl:

ensembl_id ENSDART00000091876

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058063 lncRNA downstream 1440 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00055331 lncRNA downstream 171302 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055330 lncRNA downstream 268264 8634704 ~ 8638629 (-) True XLOC_028520
TCONS_00057326 lncRNA downstream 686902 8219461 ~ 8219991 (-) True XLOC_028517
TCONS_00058062 lncRNA downstream 692458 8213170 ~ 8214435 (-) True XLOC_028516
TCONS_00058066 lncRNA upstream 39455 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00055345 lncRNA upstream 181123 9189974 ~ 9192445 (-) True XLOC_028530
TCONS_00058067 lncRNA upstream 379967 9388818 ~ 9389648 (-) True XLOC_028533
TCONS_00058068 lncRNA upstream 505697 9514548 ~ 9521942 (-) True XLOC_028534
TCONS_00055357 lncRNA upstream 595515 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00055336 mRNA downstream 3653 8852010 ~ 8903240 (-) False XLOC_028524
TCONS_00055337 mRNA downstream 4487 8898760 ~ 8902406 (-) True XLOC_028524
TCONS_00055335 mRNA downstream 24321 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055334 mRNA downstream 111643 8780179 ~ 8795250 (-) True XLOC_028523
TCONS_00055333 mRNA downstream 127704 8743555 ~ 8779189 (-) True XLOC_028522
TCONS_00055341 mRNA upstream 42737 9051588 ~ 9054947 (-) True XLOC_028528
TCONS_00055342 mRNA upstream 94331 9103182 ~ 9173552 (-) True XLOC_028529
TCONS_00055343 mRNA upstream 175630 9184481 ~ 9196291 (-) False XLOC_028530
TCONS_00055344 mRNA upstream 178195 9187046 ~ 9191220 (-) False XLOC_028530
TCONS_00055346 mRNA upstream 198871 9207722 ~ 9214288 (-) True XLOC_028531
TCONS_00055328 other downstream 318985 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 765427 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1030949 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1652710 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2597907 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2599345 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3266263 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3404568 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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