Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058065 |
| length | 978 |
| lncRNA type | sense_over |
| GC content | 0.40 |
| exon number | 6 |
| gene id | XLOC_028526 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 8906893 ~ 9008851 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048747 | muscle fiber development | biological_process |
| GO:0007224 | smoothened signaling pathway | biological_process |
| GO:0030509 | BMP signaling pathway | biological_process |
| GO:0060215 | primitive hemopoiesis | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058063 | lncRNA | downstream | 69664 | 8904291 ~ 8905453 (-) | True | XLOC_028525 |
| TCONS_00055331 | lncRNA | downstream | 239526 | 8709082 ~ 8735591 (-) | True | XLOC_028521 |
| TCONS_00055330 | lncRNA | downstream | 336488 | 8634704 ~ 8638629 (-) | True | XLOC_028520 |
| TCONS_00057326 | lncRNA | downstream | 755126 | 8219461 ~ 8219991 (-) | True | XLOC_028517 |
| TCONS_00058062 | lncRNA | downstream | 760682 | 8213170 ~ 8214435 (-) | True | XLOC_028516 |
| TCONS_00058066 | lncRNA | upstream | 39528 | 9048306 ~ 9050945 (-) | True | XLOC_028527 |
| TCONS_00055345 | lncRNA | upstream | 181196 | 9189974 ~ 9192445 (-) | True | XLOC_028530 |
| TCONS_00058067 | lncRNA | upstream | 380040 | 9388818 ~ 9389648 (-) | True | XLOC_028533 |
| TCONS_00058068 | lncRNA | upstream | 505770 | 9514548 ~ 9521942 (-) | True | XLOC_028534 |
| TCONS_00055357 | lncRNA | upstream | 595588 | 9604366 ~ 9607454 (-) | False | XLOC_028539 |
| TCONS_00055336 | mRNA | downstream | 71877 | 8852010 ~ 8903240 (-) | False | XLOC_028524 |
| TCONS_00055337 | mRNA | downstream | 72711 | 8898760 ~ 8902406 (-) | True | XLOC_028524 |
| TCONS_00055335 | mRNA | downstream | 92545 | 8849816 ~ 8882572 (-) | False | XLOC_028524 |
| TCONS_00055334 | mRNA | downstream | 179867 | 8780179 ~ 8795250 (-) | True | XLOC_028523 |
| TCONS_00055333 | mRNA | downstream | 195928 | 8743555 ~ 8779189 (-) | True | XLOC_028522 |
| TCONS_00055341 | mRNA | upstream | 42810 | 9051588 ~ 9054947 (-) | True | XLOC_028528 |
| TCONS_00055342 | mRNA | upstream | 94404 | 9103182 ~ 9173552 (-) | True | XLOC_028529 |
| TCONS_00055343 | mRNA | upstream | 175703 | 9184481 ~ 9196291 (-) | False | XLOC_028530 |
| TCONS_00055344 | mRNA | upstream | 178268 | 9187046 ~ 9191220 (-) | False | XLOC_028530 |
| TCONS_00055346 | mRNA | upstream | 198944 | 9207722 ~ 9214288 (-) | True | XLOC_028531 |
| TCONS_00055328 | other | downstream | 387209 | 8587787 ~ 8587908 (-) | True | XLOC_028518 |
| TCONS_00055327 | other | downstream | 833651 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |
| TCONS_00055310 | other | downstream | 1099173 | 7870665 ~ 7875944 (-) | False | XLOC_028507 |
| TCONS_00055389 | other | upstream | 1652783 | 10661561 ~ 10661677 (-) | True | XLOC_028553 |
| TCONS_00055432 | other | upstream | 2597980 | 11606758 ~ 11606855 (-) | True | XLOC_028574 |
| TCONS_00055433 | other | upstream | 2599418 | 11608196 ~ 11608283 (-) | True | XLOC_028575 |
| TCONS_00055457 | other | upstream | 3266336 | 12275114 ~ 12286066 (-) | True | XLOC_028592 |
| TCONS_00055464 | other | upstream | 3404641 | 12413419 ~ 12433016 (-) | True | XLOC_028596 |
