RNA id: TCONS_00058066


Basic Information

Item Value
RNA id TCONS_00058066
length 2137
lncRNA type antisense_over
GC content 0.29
exon number 2
gene id XLOC_028527
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9048306 ~ 9050945 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaatcttgGGTATGAGCATGAATTAAGTTTTTTTTGCTGAACAATCTGTTTAATAGGGTTGCATTAATTATAATATCAAGGAGCATTTTTAGTCTagcaaaatattgtcttgttttaagaaatatgtcAAAACTgagtttgtccttaaaacaagcaaaataatcttgcggcaaaaggaaaaacaagattattttgcttgttttaagggtaAACTCATTTACTTtgccaaataatttttaaaaacaattcaacATTTTATGCTtttctataaaatgcttcttgatttagagTTTAAATATTCGGAGtagaaaataatcaaaaatcaaagtaagaaaagcattgttAGAGTGCAATAACCTCACTGGCAAAGATATagaggtatatatatattttcaatcaaGAAAAGCTAAGTTTTTGTCATTTCtgttgtttattgtaaaaacaactCTCCTTAAATGTTTGTTTGCAGTTGATATAAAGTTTAAATACTGTTGCATATGAAGACTATTTGGCAATATGACACTTCCAGTGGGACCGACAGCTTATACAGAACCTCAAACTcccaataaaataaattgtttgctcTTGTAAAACAAAATTACGATGGttcagacaaaacaaacacatattttcaGTCATCCTAACAAGAATGTCAGAAACAGTTCACATTGTACTGTACTCAAGTTACTTCTCCATATTTTCCCCCAAGAATGTaccactttttttgtgtgttgtacaaaataaataacttCTTTTAAAAGAGAATAGTGTTTATATCATTTCCCTTTCCACATTTCCAATCGTCTGTCTGGAatgcaaaattaaatatataaaataagacaAATCGTCGTATCctctaataaaatatatacagttatgcTAATAAAAACAATTGTCATGAAAATGCTATGCATATTAAAAAATCCTTGGGATGTACAAATATGCTGATACAGATTTCATAAAGTGGCAGTGATGTGACATGGCTTGAAAATATGAGACCACAGACAATAAAAGTAAAGAATAGCTTAAAattttttcttaattgatataaattatattttataagtttGAGGTCAGAaagacttatttaaaataaaaattaatacttttaatacCCAAGGATACATTAAATAGATGAAAAGTGAAAAAACACTGTAATAagtgattatttactttaaaaagtgagaaaacttataaactttatttaaaaaagtgagcaaatCTATTGCAACTTGTAATAAATTTAACTTGTAataaatttacttaatttattatgtaaagtcaactaattgttttaaaagcacaGGTTTATACACTTATTTTAggtaaaaacaaatcatttttacagtgtaccttcataatgttataaatatttatatttcaattaGTTTTAGCTTTATATTCAGCttttaagacaaaaacatgaTGGTttccttaaaaatgtttttctacTTTGATAAACATTACTGAGCAAAACATTAATATGATTAATGCATATTaatgtgatttctgaaagatcgtGTAATCAAAGCCTAGAGTAATGATGCTTTtgaaacacagaaataaattacattaaatattactGCTTGTCGATCATATATATGCTCTCCTGATCATAAGGGCGTCTTTAAAAAcacttactgaccccaaacttttacgTACAGTTGTGTAAATGAATGATATGTGATACGATACGTGAACGATTGAACAATTTCTGCAGCATCAAGCCAACAGTTTCCCAATTAACTGCTATTGTCATCATGATTGTGATACTGTTGCGGTTAATAAACTCAAATAACTCTATTTCACTTTATCACTGTGACATATTTCAGTGTTCGCAAGATAAATAATGATTTGTGACAGTTTCTTGGATCCACTTGGGGGTCTGTtgccatttctttaaaaaaattaaccagCATTTTGACACAGGCCAGTCATTACTTGTCCCTCCAAGCATTATCCAGGAAAAAAAAAGCGATATTATACAAAATGTAGGCACATCAGTGTAGTTTTGGCAGGAAATGCTCTGGGTTTCCTATCAAACCTGTTTCAAGTCAAATGGGGCTGCGGTAAAAGGCTGTTTGCAGGAAATTGTTACATTTTGGTTAAAGATTACTAAAACAAACTGTTTTTT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058065 lncRNA downstream 39528 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055340 lncRNA downstream 39528 8975118 ~ 9008778 (-) True XLOC_028526
TCONS_00058064 lncRNA downstream 39582 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058063 lncRNA downstream 142853 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00055331 lncRNA downstream 312715 8709082 ~ 8735591 (-) True XLOC_028521
TCONS_00055345 lncRNA upstream 139029 9189974 ~ 9192445 (-) True XLOC_028530
TCONS_00058067 lncRNA upstream 337873 9388818 ~ 9389648 (-) True XLOC_028533
TCONS_00058068 lncRNA upstream 463603 9514548 ~ 9521942 (-) True XLOC_028534
TCONS_00055357 lncRNA upstream 553421 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00055359 lncRNA upstream 598338 9649283 ~ 9651968 (-) True XLOC_028540
TCONS_00055338 mRNA downstream 39455 8906893 ~ 9008851 (-) False XLOC_028526
TCONS_00055339 mRNA downstream 39460 8907147 ~ 9008846 (-) False XLOC_028526
TCONS_00055336 mRNA downstream 145066 8852010 ~ 8903240 (-) False XLOC_028524
TCONS_00055337 mRNA downstream 145900 8898760 ~ 8902406 (-) True XLOC_028524
TCONS_00055335 mRNA downstream 165734 8849816 ~ 8882572 (-) False XLOC_028524
TCONS_00055341 mRNA upstream 643 9051588 ~ 9054947 (-) True XLOC_028528
TCONS_00055342 mRNA upstream 52237 9103182 ~ 9173552 (-) True XLOC_028529
TCONS_00055343 mRNA upstream 133536 9184481 ~ 9196291 (-) False XLOC_028530
TCONS_00055344 mRNA upstream 136101 9187046 ~ 9191220 (-) False XLOC_028530
TCONS_00055346 mRNA upstream 156777 9207722 ~ 9214288 (-) True XLOC_028531
TCONS_00055328 other downstream 460398 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 906840 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1172362 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1610616 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2555813 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2557251 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3224169 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3362474 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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