RNA id: TCONS_00055345


Basic Information

Item Value
RNA id TCONS_00055345
length 510
lncRNA type retained_intron
GC content 0.48
exon number 5
gene id XLOC_028530
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9184481 ~ 9196291 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCCTGGCGGCCCTTGCTTGCAGCTGAGTGTTACCTGCTTCAGTTACAGCCAATCACATCTCATCATTCCACTTCAGCTGAACCACAGACGGCACCGACTCCCCCACCAGAGCCAGGAGACAGAAGGGAATCTGTGCAGAAAGACGCCAAAAGTGCAGATGTCAAAATTAAAAGAGAGAAAGACTATTCATCACAGGAAAGCCCTTTGAGTcagaaagaaaaaggaaaggaTGGGGCAGACATCCAACCAACAGAGCGAGATATTTCTCCGGAGCCATCCAAGCAGCCTGAGACCACAAAGGATTGGTTTGACGTGGGTGTGTTTAAGACACTGTTCTGTGAGGTTACACACTACTTTCTGCCTTCTGAGAACGGCGACATGGCATCAGTGCTGTCTGCACAATACACATCATCTGACACAGAGGTTTGTCTACAGAGACCGCACATTTGTGAAATGCATTCTAGCAGTTTTACTTcacccttttttttttctgcacggCAGTGGAAGT

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071339 MLL1 complex cellular_component
GO:0035097 histone methyltransferase complex cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-203 Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Orthologous to human HCFC2 (host cell factor C2).

Ensembl:

ensembl_id ENSDART00000154339

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058066 lncRNA downstream 139029 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00058065 lncRNA downstream 181196 8975117 ~ 9008778 (-) False XLOC_028526
TCONS_00055340 lncRNA downstream 181196 8975118 ~ 9008778 (-) True XLOC_028526
TCONS_00058064 lncRNA downstream 181250 8907729 ~ 9008724 (-) False XLOC_028526
TCONS_00058063 lncRNA downstream 284521 8904291 ~ 8905453 (-) True XLOC_028525
TCONS_00058067 lncRNA upstream 196373 9388818 ~ 9389648 (-) True XLOC_028533
TCONS_00058068 lncRNA upstream 322103 9514548 ~ 9521942 (-) True XLOC_028534
TCONS_00055357 lncRNA upstream 411921 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00055359 lncRNA upstream 456838 9649283 ~ 9651968 (-) True XLOC_028540
TCONS_00055371 lncRNA upstream 576626 9769071 ~ 9773130 (-) False XLOC_028544
TCONS_00055342 mRNA downstream 16422 9103182 ~ 9173552 (-) True XLOC_028529
TCONS_00055341 mRNA downstream 135027 9051588 ~ 9054947 (-) True XLOC_028528
TCONS_00055338 mRNA downstream 181123 8906893 ~ 9008851 (-) False XLOC_028526
TCONS_00055339 mRNA downstream 181128 8907147 ~ 9008846 (-) False XLOC_028526
TCONS_00055336 mRNA downstream 286734 8852010 ~ 8903240 (-) False XLOC_028524
TCONS_00055346 mRNA upstream 15277 9207722 ~ 9214288 (-) True XLOC_028531
TCONS_00055347 mRNA upstream 146622 9339067 ~ 9350585 (-) True XLOC_028532
TCONS_00055348 mRNA upstream 332360 9524805 ~ 9533345 (-) True XLOC_028535
TCONS_00055349 mRNA upstream 351014 9543459 ~ 9549693 (-) True XLOC_028536
TCONS_00055350 mRNA upstream 362835 9555280 ~ 9586713 (-) False XLOC_028537
TCONS_00055328 other downstream 602066 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 1048508 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1314030 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1469116 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 2414313 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 2415751 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 3082669 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 3220974 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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