RNA id: XM_036966719.1


Basic Information

Item Value
RNA id XM_036966719.1
length 3160
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC110508402
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 6603175 ~ 6639138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATATTTTAACCACAAATCTCAATGTCCTTATCCGAGACCGAATCAGTCAGCCAAGTCTCTTTGAAAACCAGAATATCAGGGATTGTGTCCTGTACCCAGATATGAGGAAGGTCCAACTGAGATACCAACAAAGACACAGCCAGGAGTACACTCAGACTAGCTTGGAACATAGAGTAGCTTTTTGTACCTCTTATCAGGGTGATTGACAGTTTGTTGATAATTGTGAGAGGTTTTTGTGAGAGGTATTTCCTCCGCACACTGTTTCAGACTAGaaggacagacaaagagacatagacagaaagaaaagagagagacacacaaagcaataaacacacagacattcaGTGTTGGAAGACAGCCATGGGAGTTGAGGAGCAGAGGGCTGGGGAGTTTTACGTGGAGAGGGATGTTATGAACGAGCTTTGCTTGGACAAGTTGGCCAGAAGACGGACTCACTCCACCAGACCTCTCCTGAAGGAGCGGGTGAAAGATTCCCTCAGGTGTTCAGTGCCCAAGCTGAAGCGTTCTGTGCTGAGCTTTATACCTATCCTGTCATGGCTGCCTCGTTACTCAGTGAGACAAGACGCACTGGGAGACCTCATATCTGGCATAAGCATTGGCATCATGCACCTGCCTATGGGTTTGGCCTATGCTCTGCTGGCCTCTGTGCCCCCAGTGTTTGGCCTCTACACTTCCTTCTACCCTGTACTCATGTACTGCATCTTTGGCACCTCCAGACACATCTCCGTAGgcGCATTTGCTGTGACCAGCATCATGATAGGCACCACGACAGAGAGGCTGGCCCCAAACAGTAACTTCATGATTCTAAATGGAACCAATGGGACTGAAGTTATAGATGTAGTAGCCCGTGATGTCGCCAGAGTACAGATAGCAGCCAGCACCACCTTACTGAGTGGGATCTTTCTGTTTCTGCTGGGCATGATTCGGTTTGGTTTTGCGGTGACGTTCCTGTCGGATCCCATGGTACGTGCTTACATGACAGGAGCAGGTATACATGTGGTACTTTCCCAACTCCCAAGCCTCTTTGGGATCCGCGTTGGACGCTTCTCCGGACCGCTGTCTCAGGTCTATctcCTAATAGATATCTGTAGACATCTGCCAGAGACTAACATTGCGGCCGTGGTGGTAACTCTTGTGGCCTTGGCGGTCCTCATAGCGGTCAAAGAACTCAACATTTACTATGAGAAGAAAATGCCTGTGCCCGTTCCAATAGAACTCATAACGATCGTAGTAGCAACACTTATCTCTTACTACTGCAAACTGCACAGCCTATACAAAGTGGCCGTCATCGGACAGATCCCCAAAGGACTAAAGGCTCCCAGGTCACCTGACGTTAGTATGTGGGGTTCGGTAGTTGGTGATGCATTCGTAGTAGGCATAGTGGGATATGCCCTTAACATCTCCTTGGGAAAAATCTTTGGCCAAAAACACGGCTACAATGTGGACAGCAACCAGGAGATGGTAGCTATTGGTCTCTGTAACATAGTGGGAGGATTCTTTCAATGCCACGCTATTGCTGCTTCTCCGTCACGTACCCTCCTCCAGGATAGCACTGGGGGCAAGACACAGGTTGTGGGGCTGATTTCTTCAGTACTTGTGCTGATCTTCATTCTGCAACTGGGGTCACTATTTGAGGAGCTACCCAAGGCTGTCCTGGCCTGTATAGTGCTTGTGAACCTGAAAGGCCTTTTTATGCAGTTTAAAGACATTCCTGCACTCTGGAAGAGCAATAAGGTCGACCTGCTGGTGTGGTTGGTAACGCTGGTGTGTACTATCTTACTGAACCTGGACATCGGCCTAGGTGCATCCATCGGCTTCTCTATGCTCACTGTCATCTTCAAAACACAACTGCCGAGGTACTCTATCCTGGGGCATGTTCCTGGGACTGAGCTCTACCTGGATACAGACACATATGAGGAGGCTAAAGAGATACCAGGTATCACCATCTTCCGTTCCTCCACCACAATGTACTATACCAACGCTCAGCTCTACCTGGACGCACTGCAGGAGAAGAGTGGAATTGACATTGGAATGCTGCTGATGAAAAAGAAGAAAAGAGACACTGAAGAAAAGAGAAAAGAcgagaaagaaaaaaacaaagcCAAAAAAGAGGCAAAAAAGAATGGTGTGAATGGACGCCTACCCAACAATACAGTCCATCCAGATGAcaagagggatgaggagaaaggTTCCCCAGACCTGAAATTGAACCAGACAGCCATTGCCCTAGTTGACCGACCCATCAACGGACAGGTGAACTGGGGTTTTGAGCAGCAAGGTAACGGGTTCGACCAGGACTCTAAAACTGATATTCATGGCGATGATCACATAACACAGATGTCCAGTACcggaagagaaggggagatggggaggagctCCGTCAacgacacacacaccatcatcctGGACCTATCCACAGCCAACTTTGCTGACACGGCCACTGTGAAGACGCTGAAaaatATATTCCTAAACTACAGAAAGATTGACATTGACATTTATTTAACTGGATGCCAAGTCTGTGTGGTGGAGCAGTTATCGAGTGCAGGCTTCTTCTCTGAGTCCATCCCTAAAAGCTGTCTGTTCGCTACGATCCACGACGCGGTGCTACACTGCCTCCGACTGCATGGGGCCTCAGACGTACCCATCATCTACGAGTATGCTCTGGACTTGACCTGCACTACCAACATGTAACCAACAGGGGTCACTTTGTTCCTCTTCCACTCCACCTTCCTCCTTCCATAACTTCACCTTCATCTGCCTGGCTTCCCATTGGTTCCCCtcacctcttccctctctgtgAAAGAGAATGCACcaccgtgtgtgcgtgtgttttgcCGATTGGACCAAGGCAGTTCCCCCTTCATGTTATGTTATATAACTGAACACAAAATACCTCCCCGAAATACAACTATAAAACTCCCCAAAATATTTGTCAGCCACCTAAGATGTGTCGTCTAGTCAGCAGTTCCCTTCACCTCCCTATTTAATCCATTCCTACTGGGGCCAGTGTGTCCCAGACAGTAGTATGTCCTGTACCTCAGGGGCCTTCTCCCATATATAAATACACATtcttatatatatacatacacacacataaatatacatacagtatactgtatatatatatatacacacag

Function

GO: NA

KEGG:

id description
K17471 SULTR3; sulfate transporter 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2401361 lncRNA downstream 356 6602019 ~ 6602819 (-) True G2099375
TU2401370 lncRNA downstream 40908 6559904 ~ 6562267 (-) True G2099384
TU2401363 lncRNA downstream 53608 6548898 ~ 6549567 (-) True G2099377
TU2401219 lncRNA downstream 212501 6389544 ~ 6390674 (-) True G2099239
TU2401216 lncRNA downstream 235741 6366083 ~ 6367434 (-) True LOC110508398
TU2401415 lncRNA upstream 6859 6645997 ~ 6646308 (-) True G2099428
TU2401420 lncRNA upstream 9436 6648574 ~ 6648800 (-) True G2099433
TU2401857 lncRNA upstream 48725 6687863 ~ 6688080 (-) True G2099835
TU2401861 lncRNA upstream 51480 6690618 ~ 6690829 (-) True G2099839
TU2401862 lncRNA upstream 53017 6692155 ~ 6692411 (-) True G2099840
XR_005040298.1 mRNA downstream 29647 6573338 ~ 6573528 (-) True LOC118944893
XR_005040299.1 mRNA downstream 30123 6572936 ~ 6573052 (-) True LOC118944894
XM_021588908.2 mRNA downstream 147093 6416696 ~ 6456082 (-) False LOC110508399
XM_021588910.2 mRNA downstream 147093 6416696 ~ 6456082 (-) False LOC110508399
XM_021588911.2 mRNA downstream 147093 6416696 ~ 6456082 (-) True LOC110508399
XR_005040300.1 mRNA upstream 41368 6680506 ~ 6680622 (-) True LOC118944895
LOC118944892 mRNA upstream 65723 6704861 ~ 6704979 (-) True LOC118944892
XM_021588914.2 mRNA upstream 113670 6752808 ~ 6799481 (-) False LOC110508403
XM_021588915.2 mRNA upstream 113670 6752808 ~ 6799481 (-) False LOC110508403
XR_002471301.2 mRNA upstream 113670 6752808 ~ 6799481 (-) False LOC110508403
TU2401301 other downstream 164079 6426170 ~ 6439096 (-) True G2099318
TU2400957 other downstream 364562 6238169 ~ 6238613 (-) True G2098997
TU2400956 other downstream 365081 6237433 ~ 6238094 (-) True G2098996
TU2400731 other downstream 604853 5995825 ~ 5998322 (-) False G2098793
TU2402165 other upstream 564468 7203606 ~ 7206488 (-) True G2100109
TU2402839 other upstream 954156 7593294 ~ 7593815 (-) True G2100707
TU2402916 other upstream 1129278 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other upstream 1129278 7768416 ~ 7771183 (-) True LOC110508434
TU2403222 other upstream 1354273 7993411 ~ 7998865 (-) True LOC110508443

Expression Profile