Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055351 |
| length | 4617 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 25 |
| gene id | XLOC_028537 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 9555280 ~ 9586713 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051124 | synaptic growth at neuromuscular junction | biological_process |
| GO:0051968 | positive regulation of synaptic transmission, glutamatergic | biological_process |
| GO:2000463 | positive regulation of excitatory postsynaptic potential | biological_process |
| GO:0097107 | postsynaptic density assembly | biological_process |
| GO:0120054 | intestinal motility | biological_process |
| GO:0048854 | brain morphogenesis | biological_process |
| GO:0007610 | behavior | biological_process |
| GO:0060997 | dendritic spine morphogenesis | biological_process |
| GO:0060999 | positive regulation of dendritic spine development | biological_process |
| GO:2000311 | regulation of AMPA receptor activity | biological_process |
| GO:0007416 | synapse assembly | biological_process |
| GO:0060291 | long-term synaptic potentiation | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0030425 | dendrite | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0044309 | neuron spine | cellular_component |
| GO:0008328 | ionotropic glutamate receptor complex | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0035255 | ionotropic glutamate receptor binding | molecular_function |
| GO:0030159 | signaling receptor complex adaptor activity | molecular_function |
| GO:0030160 | synaptic receptor adaptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041210-74 | Predicted to enable ionotropic glutamate receptor binding activity and synaptic receptor adaptor activity. Acts upstream of or within intestinal motility. Predicted to be located in cytoplasm and synapse. Predicted to be active in dendritic spine and postsynaptic density. Predicted to colocalize with postsynaptic membrane. Is expressed in brain; forebrain; and midbrain. Used to study autism spectrum disorder. Human ortholog(s) of this gene implicated in Phelan-McDermid syndrome and schizophrenia 15. Orthologous to human SHANK3 (SH3 and multiple ankyrin repeat domains 3). |
| ensembl_id | ENSDART00000183079 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058068 | lncRNA | downstream | 33546 | 9514548 ~ 9521942 (-) | True | XLOC_028534 |
| TCONS_00058067 | lncRNA | downstream | 165840 | 9388818 ~ 9389648 (-) | True | XLOC_028533 |
| TCONS_00055345 | lncRNA | downstream | 363043 | 9189974 ~ 9192445 (-) | True | XLOC_028530 |
| TCONS_00058066 | lncRNA | downstream | 504543 | 9048306 ~ 9050945 (-) | True | XLOC_028527 |
| TCONS_00055340 | lncRNA | downstream | 546710 | 8975118 ~ 9008778 (-) | True | XLOC_028526 |
| TCONS_00055357 | lncRNA | upstream | 25067 | 9604366 ~ 9607454 (-) | False | XLOC_028539 |
| TCONS_00055359 | lncRNA | upstream | 69984 | 9649283 ~ 9651968 (-) | True | XLOC_028540 |
| TCONS_00055371 | lncRNA | upstream | 189772 | 9769071 ~ 9773130 (-) | False | XLOC_028544 |
| TCONS_00055375 | lncRNA | upstream | 218754 | 9798053 ~ 9801647 (-) | True | XLOC_028545 |
| TCONS_00055377 | lncRNA | upstream | 240058 | 9819357 ~ 9822519 (-) | True | XLOC_028546 |
| TCONS_00055349 | mRNA | downstream | 5795 | 9543459 ~ 9549693 (-) | True | XLOC_028536 |
| TCONS_00055348 | mRNA | downstream | 22143 | 9524805 ~ 9533345 (-) | True | XLOC_028535 |
| TCONS_00055347 | mRNA | downstream | 204903 | 9339067 ~ 9350585 (-) | True | XLOC_028532 |
| TCONS_00055346 | mRNA | downstream | 341200 | 9207722 ~ 9214288 (-) | True | XLOC_028531 |
| TCONS_00055344 | mRNA | downstream | 364268 | 9187046 ~ 9191220 (-) | False | XLOC_028530 |
| TCONS_00055355 | mRNA | upstream | 8669 | 9587968 ~ 9592402 (-) | True | XLOC_028538 |
| TCONS_00055356 | mRNA | upstream | 24007 | 9603306 ~ 9609634 (-) | False | XLOC_028539 |
| TCONS_00055358 | mRNA | upstream | 29941 | 9609240 ~ 9637398 (-) | True | XLOC_028539 |
| TCONS_00055360 | mRNA | upstream | 72917 | 9652216 ~ 9665002 (-) | False | XLOC_028541 |
| TCONS_00055361 | mRNA | upstream | 74124 | 9653423 ~ 9667410 (-) | False | XLOC_028541 |
| TCONS_00055328 | other | downstream | 967580 | 8587787 ~ 8587908 (-) | True | XLOC_028518 |
| TCONS_00055327 | other | downstream | 1414022 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |
| TCONS_00055310 | other | downstream | 1679544 | 7870665 ~ 7875944 (-) | False | XLOC_028507 |
| TCONS_00055389 | other | upstream | 1082262 | 10661561 ~ 10661677 (-) | True | XLOC_028553 |
| TCONS_00055432 | other | upstream | 2027459 | 11606758 ~ 11606855 (-) | True | XLOC_028574 |
| TCONS_00055433 | other | upstream | 2028897 | 11608196 ~ 11608283 (-) | True | XLOC_028575 |
| TCONS_00055457 | other | upstream | 2695815 | 12275114 ~ 12286066 (-) | True | XLOC_028592 |
| TCONS_00055464 | other | upstream | 2834120 | 12413419 ~ 12433016 (-) | True | XLOC_028596 |
