RNA id: TCONS_00055358


Basic Information

Item Value
RNA id TCONS_00055358
length 689
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_028539
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9603306 ~ 9637398 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtaggcttgctatagctgaaacacagagacaGTTTGAAGGCCATAGCCTTGACTTCAGGTTATCGCTAGACAGAATGAAGTGGAGGACCCTTCATACACCAGACAGCAGGAGGGATTCATTAACTCACCTCGACTTGAACAGCATgcttgCTATAGCTGAAGCACAGAGACAGTTTGAAGGCCATAGCCTTGACTTCAGGTTATCGCTAGACAGAATGAAGTGGAGGACCCTTCATACACCAGACAGCAGGAGGGATTCATTAACTCACCTCGACTTGAACAGCATgcttgctatagctgaaacacagagacaGCTTGAAGGCCATAGCCTTGACTTCAGGTTATCGCTAGACAGAATGAAGTGGAGGACCCTTCATACACCAGACAGCAGGAGGGATTCATTAACTCACCTCGACTTGAACAGCATTGCGATGCCAGCAGGAGGACAGGACAGATGCCGGGCTCTTGCTCTCCAGCCCGGGGAGAGCTCACCCAGTGATGACCTATAGGTTTACCTACTTTGAGTGTTTACTCAGCCTTTCACCATGAGCTCCTTCGCTGGCCGTATGAAGGAGTATCCCAGCATCTCCTTGGACCGCTTTGACAGGGAGAATCTGCACGCCAGAGCTTATTTCCTCTCTCACTGCCATAAAGATCATATGAAAGGGTTGAAAGGACCTTTACTGAAG

Function

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0006310 DNA recombination biological_process
GO:0036297 interstrand cross-link repair biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0031848 protection from non-homologous end joining at telomere biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0070419 nonhomologous end joining complex cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0035312 5'-3' exodeoxyribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
ko03450 Non-homologous end-joining
ko05340 Primary immunodeficiency
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041210-72 Predicted to enable 5'-3' exodeoxyribonuclease activity and damaged DNA binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining; interstrand cross-link repair; and protection from non-homologous end joining at telomere. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in nucleus. Predicted to be part of nonhomologous end joining complex. Human ortholog(s) of this gene implicated in Omenn syndrome; common variable immunodeficiency; severe combined immunodeficiency; and severe combined immunodeficiency with sensitivity to ionizing radiation. Orthologous to human DCLRE1C (DNA cross-link repair 1C).

Ensembl:

ensembl_id ENSDART00000150253

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055357 lncRNA downstream 1786 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00058068 lncRNA downstream 87298 9514548 ~ 9521942 (-) True XLOC_028534
TCONS_00058067 lncRNA downstream 219592 9388818 ~ 9389648 (-) True XLOC_028533
TCONS_00055345 lncRNA downstream 416795 9189974 ~ 9192445 (-) True XLOC_028530
TCONS_00058066 lncRNA downstream 558295 9048306 ~ 9050945 (-) True XLOC_028527
TCONS_00055359 lncRNA upstream 11885 9649283 ~ 9651968 (-) True XLOC_028540
TCONS_00055371 lncRNA upstream 131673 9769071 ~ 9773130 (-) False XLOC_028544
TCONS_00055375 lncRNA upstream 160655 9798053 ~ 9801647 (-) True XLOC_028545
TCONS_00055377 lncRNA upstream 181959 9819357 ~ 9822519 (-) True XLOC_028546
TCONS_00058069 lncRNA upstream 268683 9906081 ~ 9909371 (-) False XLOC_028550
TCONS_00055355 mRNA downstream 16838 9587968 ~ 9592402 (-) True XLOC_028538
TCONS_00055353 mRNA downstream 29806 9555488 ~ 9579434 (-) False XLOC_028537
TCONS_00055352 mRNA downstream 29941 9555488 ~ 9579299 (-) False XLOC_028537
TCONS_00055360 mRNA upstream 14818 9652216 ~ 9665002 (-) False XLOC_028541
TCONS_00055361 mRNA upstream 16025 9653423 ~ 9667410 (-) False XLOC_028541
TCONS_00055362 mRNA upstream 16026 9653424 ~ 9667380 (-) False XLOC_028541
TCONS_00055363 mRNA upstream 16739 9654137 ~ 9664995 (-) False XLOC_028541
TCONS_00055364 mRNA upstream 27319 9664717 ~ 9665267 (-) True XLOC_028541
TCONS_00055328 other downstream 1021332 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 1467774 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1733296 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 1024163 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 1969360 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 1970798 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 2637716 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 2776021 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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