RNA id: TCONS_00055364


Basic Information

Item Value
RNA id TCONS_00055364
length 453
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_028541
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9652216 ~ 9667410 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGACATCACATATATACCATATaattgcaggttaactatgtttaacTTTACCtgttaaaagcaattagttaccagttaattagttaaagttattagtatcTAATAGGGTTaaagtaactaataaccttaaatTTTCAGAAtttaattgtaatgcaataatgtgcgtctttggtaaagctgctttgaaacaataatattgtgaaaagcacaatacaaataaacctgaattgaGTTTAATTGAATACTATGTTTTACCCTGTAGGCTGAGCATGAACACAGGCGATGTCCCGGCCACTGTGACACTTGAATCCGTCAATTCTGTCACATTTACCCAGGACACTGATGGAAACATCATACTGCACTGCCCTCAAAATGATGGGGAGGACCTGGGTTCAGACGAGACCACTGAACCGGTTCACAAACGAATACGATTGTCCAGTGAGGATGGAG

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040718-413 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human DMTF1 (cyclin D binding myb like transcription factor 1).

Ensembl:

ensembl_id ENSDART00000150318

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055359 lncRNA downstream 12749 9649283 ~ 9651968 (-) True XLOC_028540
TCONS_00055357 lncRNA downstream 57263 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00058068 lncRNA downstream 142775 9514548 ~ 9521942 (-) True XLOC_028534
TCONS_00058067 lncRNA downstream 275069 9388818 ~ 9389648 (-) True XLOC_028533
TCONS_00055345 lncRNA downstream 472272 9189974 ~ 9192445 (-) True XLOC_028530
TCONS_00055371 lncRNA upstream 103804 9769071 ~ 9773130 (-) False XLOC_028544
TCONS_00055375 lncRNA upstream 132786 9798053 ~ 9801647 (-) True XLOC_028545
TCONS_00055377 lncRNA upstream 154090 9819357 ~ 9822519 (-) True XLOC_028546
TCONS_00058069 lncRNA upstream 240814 9906081 ~ 9909371 (-) False XLOC_028550
TCONS_00055387 lncRNA upstream 242602 9907869 ~ 9909371 (-) True XLOC_028550
TCONS_00055358 mRNA downstream 27319 9609240 ~ 9637398 (-) True XLOC_028539
TCONS_00055356 mRNA downstream 55083 9603306 ~ 9609634 (-) False XLOC_028539
TCONS_00055355 mRNA downstream 72315 9587968 ~ 9592402 (-) True XLOC_028538
TCONS_00055353 mRNA downstream 85283 9555488 ~ 9579434 (-) False XLOC_028537
TCONS_00055365 mRNA upstream 31698 9696965 ~ 9722568 (-) True XLOC_028542
TCONS_00055366 mRNA upstream 58925 9724192 ~ 9764769 (-) False XLOC_028543
TCONS_00055367 mRNA upstream 58969 9724236 ~ 9764767 (-) False XLOC_028543
TCONS_00055368 mRNA upstream 59537 9724804 ~ 9728730 (-) True XLOC_028543
TCONS_00055369 mRNA upstream 103783 9769050 ~ 9780949 (-) False XLOC_028544
TCONS_00055328 other downstream 1076809 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 1523251 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1788773 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 996294 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 1941491 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 1942929 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 2609847 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 2748152 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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