RNA id: TU2405361


Basic Information

Item Value
RNA id TU2405361
length 669
RNA type TUCP
GC content 0.57
exon number 3
gene id LOC110508473
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9739138 ~ 9883971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgcacACTGACATGGACCGAGGTGATGGACGCACCAAGTACGTGCTGAGGGGCGAGGGGGCGGGGGCGGTGTTTGTGATTGACGAGAAGACGGGCAACATCCATGTCACCAAGCCCCTGGACCGCGAGGAAAAGGACGAGTACCGCCTCATCGCCACAGCAACCGACCGGCAGACCGACCGGGCCCTGGAGCCCTCGTCCACATTCATCATCAGAGTGCAGGACATCAACGACAACCCACCTCTGTTTGAGGAAGGGCCCTACAGCGCCACGGTGCCTGAGATGGCCAACATAGgtACTTCTATAATCCAGGTGACAGCGACAGATGCTGACGACCCAACCTATGGGAACAGTGCCAGACTGGTGTACACACTGGTGCAGGGACAGCAGTTCTTCTCTGTGGACCCACAGACAGGTATACTGCGCACAGCGGTGCCTGATATGGACAGGGAAACCCAGGACCGGTACATGGTTGTTCTGCAGGCCAAGGACATGGGGGGCCATCTGGGAGGTCTCTCAGGGACCACCACTGTCACCGTGAGGCTGAGTGATGTCAACGACAACCCCCCTCGCTTCACACAGAGTAAGtggcacacacaaacatatcACATGCACACATGCTCACTTACTCCAGGacatgcacaaatacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405423 lncRNA downstream 1609 9794381 ~ 9794885 (-) True G2103023
TU2405422 lncRNA downstream 3003 9793154 ~ 9793491 (-) True G2103022
TU2405417 lncRNA downstream 14461 9781803 ~ 9782033 (-) True G2103017
TU2405414 lncRNA downstream 19951 9776306 ~ 9776543 (-) True G2103014
TU2405413 lncRNA downstream 26300 9769930 ~ 9770194 (-) True G2103013
TU2405436 lncRNA upstream 6565 9818423 ~ 9818646 (-) True G2103036
TU2405437 lncRNA upstream 6964 9818822 ~ 9819042 (-) True G2103037
TU2405442 lncRNA upstream 22666 9834524 ~ 9834736 (-) True G2103042
TU2405444 lncRNA upstream 25420 9837278 ~ 9837500 (-) True G2103044
TU2405491 lncRNA upstream 110156 9922014 ~ 9922364 (-) True G2103090
XM_036966211.1 mRNA downstream 121275 9629144 ~ 9675219 (-) False LOC110508471
XM_036966213.1 mRNA downstream 121276 9629144 ~ 9675218 (-) False LOC110508471
LOC110508157 mRNA upstream 85915 9897773 ~ 9937313 (-) True LOC110508157
LOC110508158 mRNA upstream 127115 9938973 ~ 9940505 (-) True LOC110508158
XM_021589014.2 mRNA upstream 192368 10004226 ~ 10007929 (-) False LOC110508476
XM_021589018.2 mRNA upstream 218935 10030793 ~ 10041030 (-) False LOC110508478
XM_021589019.2 mRNA upstream 218935 10030793 ~ 10041031 (-) True LOC110508478
TU2405415 other downstream 19586 9776619 ~ 9776908 (-) True G2103015
TU2405308 other downstream 227443 9567966 ~ 9569051 (-) True G2102910
TU2405103 other downstream 541328 9231694 ~ 9255166 (-) False G2102731
TU2405120 other downstream 616344 9178334 ~ 9180150 (-) True LOC110508459
TU2404356 other downstream 818395 8976852 ~ 8978099 (-) True LOC110508274
TU2405551 other upstream 192368 10004226 ~ 10007903 (-) True LOC110508476
TU2405613 other upstream 301570 10113428 ~ 10115397 (-) True G2103203
TU2405667 other upstream 394205 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 896154 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 1074340 10886198 ~ 10894080 (-) True LOC110508522

Expression Profile