RNA id: LOC110508158


Basic Information

Item Value
RNA id LOC110508158
length 865
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110508158
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9938973 ~ 9940505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAAAGGAGCCTTGGTTGGGGTGGATTTAAAtctgagagaggtggaggggtccCTCTGCATTCTTTCATACCTACCCCTCAGAGCTCTGTTCCTTTCCGCTGTGACAACAGACACTCGTCCCTTTCCTCcctgtccacctctccatcaCCGCCCACCCGCCGCCCATTCCTTTTGTCTCACGGAACCACTACCCTGGCCTTTGTGTTCCAAGGAGGTGTTATAGCAGCGGCAGACACACGTGCCAGCTGCTCAGGGCTtgtctcctgtccctctgtccagaAGATACTGCCCATCCACTCCCATTTACTGGTCACCACTTCAGGCAGTGGTGCAGACTGCATGCCATTGGAGAGAATCCTGGCTAGAGAGATCCGCCCTTTACCAGCTACGCCACGGCTGCCGCTTGTCAATCACTAGCTCTGCCAAGCTCCTCTCTCATATATTGGAACCATTTAAGGGGACTGATGTGTGTGTGGCAGCCATTCTATCTGGCTCGGATGTAGAGGAGGTTAGGGTTGATCGTTGTGGCCCAAAGCTCTTCTATGTGTGCAGTGACGGCACCCGTCTGCAGGGAGAGTTTTTCTCAGTGGGCTCAGGTTCGCCCTATGCCTATGCAGTACTGGATGGAGGGGTTCGGTGGAgcctgagggaggaggaggcaaTCTCATTGGCCAGAGAAATTGTGTACAGGGCCACACACAGGGATGCATGTTCAGGGAATTGTGTGGACCTCTTTCACATCACTGCCCAAGGATATAgccacagagacagggaggacttgagagaggagtaccacaaagagaagggagagggtgcTGAAGATGATTTCTACTCACAAAAGGACAAAGTCAGTGTAGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405499 lncRNA downstream 10508 9928153 ~ 9928465 (-) True G2103098
TU2405496 lncRNA downstream 12289 9926467 ~ 9926684 (-) True G2103095
TU2405491 lncRNA downstream 16609 9922014 ~ 9922364 (-) True G2103090
TU2405444 lncRNA downstream 101473 9837278 ~ 9837500 (-) True G2103044
TU2405442 lncRNA downstream 104237 9834524 ~ 9834736 (-) True G2103042
TU2405512 lncRNA upstream 4443 9944948 ~ 9945292 (-) True G2103111
TU2405516 lncRNA upstream 6562 9947067 ~ 9947303 (-) True G2103115
TU2405531 lncRNA upstream 28194 9968699 ~ 9974115 (-) False G2103127
TU2405528 lncRNA upstream 28556 9969061 ~ 9974115 (-) False G2103127
TU2405529 lncRNA upstream 28556 9969061 ~ 9974115 (-) False G2103127
LOC110508157 mRNA downstream 1660 9897773 ~ 9937313 (-) True LOC110508157
XM_036966297.1 mRNA downstream 55002 9743940 ~ 9883971 (-) False LOC110508473
XM_036966293.1 mRNA downstream 55006 9739138 ~ 9883967 (-) False LOC110508473
XM_036966294.1 mRNA downstream 56074 9739138 ~ 9882899 (-) False LOC110508473
XM_036966211.1 mRNA downstream 263754 9629144 ~ 9675219 (-) False LOC110508471
XM_021589014.2 mRNA upstream 63721 10004226 ~ 10007929 (-) False LOC110508476
XM_021589018.2 mRNA upstream 90288 10030793 ~ 10041030 (-) False LOC110508478
XM_021589019.2 mRNA upstream 90288 10030793 ~ 10041031 (-) True LOC110508478
XR_005040255.1 mRNA upstream 117851 10058356 ~ 10060043 (-) False LOC118944863
XM_021589020.2 mRNA upstream 128361 10068866 ~ 10076428 (-) True dhrs1
TU2405361 other downstream 127115 9796494 ~ 9811858 (-) True LOC110508473
TU2405415 other downstream 162065 9776619 ~ 9776908 (-) True G2103015
TU2405308 other downstream 369922 9567966 ~ 9569051 (-) True G2102910
TU2405103 other downstream 683807 9231694 ~ 9255166 (-) False G2102731
TU2405120 other downstream 758823 9178334 ~ 9180150 (-) True LOC110508459
TU2405551 other upstream 63721 10004226 ~ 10007903 (-) True LOC110508476
TU2405613 other upstream 172923 10113428 ~ 10115397 (-) True G2103203
TU2405667 other upstream 265558 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 767507 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 945693 10886198 ~ 10894080 (-) True LOC110508522

Expression Profile