RNA id: XM_021589019.2


Basic Information

Item Value
RNA id XM_021589019.2
length 4704
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110508478
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10030793 ~ 10041031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCCTCTCTATCGTCACTCAGGAGATGGTGGGGCCTGTGTGAGTTTCTGGTCCTCGTCTTGGCAGGACAGGGGAAACGCTCGGATTTTCAGAACTAAAGCAACAACTGACCGAGAGGGGTACAGTAAGGAAACGGGTTCAACCAATTGCTGATTCACTTCTAAAGGTGTATCATTATCAAGTATCCGTTTGGTTCTTAACTTGAGACAAAACAAAGTTCTAGAATTGTTTCGCGTCATTGTATCCGAAACGAGAACCCGTTTGAGGTTCGACGGATAGATAAAGCGACGGGGTCAGACAGACTATTGTTTCCTGTCCAACTTCAGCCATTAACAGGGTTAACAAAAAAAGACTGGgatataaaaaattaaataaaaactttATCCAACGCCAGAGAATAAATGGGCTAAAACATGATTCCGGTGTTTCTGTTGTGACTCACTGCCTCTGGTGTGGGGTCAAACTTCATTCTCAGAGGACGGAGAACTTGTGAAAAGAGGACAGAGCGCTTTGAAAAGTAGATGCAATTATACTTAGCTGTGGATATTGTCTCACATTCCTACAGCCCAAAGGACCAACTGCACGGACAACTGACTGGAGTGACGTGCGGTGACACCACCGATGGCAACACACATTGACCGTAACAGAAGAATAGGCCTGGAGGTGAATATGGAGACATTCCAGAGTGACGTCACAAAGACGGCGTGTGAAGGAAAGCATGCCGCCCCGCGTTCCTCCAAAACGCCACACCACCAGATAACCAATGGAAAGAGCCATCTATCCTTTGACCACGATGCAACAGACAGTGATGGAGGCAAGGTTAGAGATGGTGGTGTTAGTTTCAGCACCAACCACAACTCTGTGGTGTGCCTGCCTTTGGTCTCTGAGGGCCCGAAGCTAGTATGGACACAGTCAAATCAGACACGTGAGCTTGACACCATCCAAGAGCTGATCCAGGCATTCAATGTGTTCCCATACCCAACATCTCGTGAGGTGAATGCCTTGGCACGGCTCTGTGCCCTGCCTCTGGACAAAGTCAAGGTCTGGTTCATGGTGCAGAGAATCAAATACGGCATCAGCTGGGCCTCAGAGGAGATTGAGGAGACGCGTGGCAAGCTGGCCGGACCTGAGTGGACTAACGACTATGCAAATGAGAAAGAGGAGATAAAGATGAGGAAGGGGTGTGGGGAGATGACTGTGGAAGCAGAGGACACAGGCCAAATGAATAATGGTCTTAACTCTTCCCTGCTCCACCCAAGAAAACGTGCCAGACATGAGACTCCAGAACACTGCAAACCAGCCTCCACCATCCGACATTTCAgttcctctctcccaccccctcagGATTCATACTACTACCGCCCTCCTGTAGACATGCCAGCAACTACCGCGACAGAGCCTTCCCTGAACCTCTCTGAGACCTCACTTGGCTCTCCACAGCGACAACAACGCGGACGCTACAAAAAGACCAAAGCTCAGCTTGCAGTCCTTCGCAGCAGCTTCCTGCGTGAAAACTGGCCTGCAGAGACAGAGCTCCGATGCCTGCAGAATGAAACGGGCCTGAGCCGCAATGACATCCGCAAATGGTTCAGCGACAGCCGGTACCAGCTTAGAAATGGGCGCGGACTGCTAAGAACATCCATGGTCTACCCTCAGCTCGTCATAGGAGAAGCAAAGGACGAGTCTCAGCAACTCCAGTCTTTTCCACGCGTAGCTCACAGGCCTCGGGATCAAGAAAATGATATTGAAGTGCAGAGAGGGGCTCAATGGAAGGGAGCTCGCAGCAATGGGGTGAAAGATTCACATTTCTTCCAGAACTTCCTGTCAAACAGCCTGGAGACCTTTGGGGAGGGAGCAGTAGAGGCGGAGGAGGACGAGGTTGCGGAGGAGGACGAGGTTGCAGAGGAAGCCTCTGTTCACACTGAGACTGTTAAGGAAGAGGAGGTGAAAAAGGAAGAAAAGCCCCTACAGTTGATTAGGGGCAACAAAGACCCAGAGATTAAACAACCACCATCATCCGTTACCATCTGTgcttcttcctccccctctcattctaccacccctcccctttcGACTATTGTCCCCACTATTAAGTATAGTTCCACTAGCACCAGCACCCTGCAGAAGTCTGCTCGCTCAGCCAAAGCCTCACTCacagccctgtctctctccagtcctccctcATCCTGGTCTACTCTTACACCTGCTGGCCGACTACGGAAGACCAAGGAACAACTGGACATACTAAAGGAGCACTTCCTGCACTGCCAGTGGCCTATGAGTGAGGACTACACCCAGCTGGTAGAACTCACAGGCTTGCCCCGTGCAGACATCATCCAGTGGTTTGGGGATACGCGCTACGCTGTTAAAAATGGGCAGCTACGCTGGGTGCAGGGGGTCCGTGAGCAATTTCTGTCTGAACTAGCCACACAGCAAAATGGCAGTGGAGTCACCGGTGGAAACTGTTCCAGTGGGATCCCTCGGGTTATGGGTAGCCGCAAACGTAAGTCTCAAGCGAATGGCGCCACAGCAGCATCCACTGCCGATTTCCCGGACATCAAGCCGCTGGGGGTTTACCATCGCTTGACTGGGGTTCTTCATGAGAAAGACCTTGATGCCCTTTGCAAAAAGTCACGAATGAGCTACCAGCAGGTGCGAGACTGGTTTGCATCTCAGGAGAGCAAGGAAATTGACCCAGAAACCAATGTTACTGATTGAGATGAGGAAATTGTGGGCGGATAAGGGTTGGAAATCAGCACTCTTTTTACAGAGGACAAGACTGATCATCTCTACGCAGAACGATGACGCTCCTTAGTTACAAAAACGTTTCATATTGAATTGACTTTGCTCTAATGTGAGCAGGTGTGACTCTTAAATGCTTACAGTCTTTGTAGTATAAGCACagatctggtgactgtgctgAATTATTGCTGCATTCAGTGTTTTGTTTTCTCATAAGCTTGGTCTTGAAGTCCTGCTTGTGCTGCCTGCCTACTATAGATAGGACAGTACCTAGTGCACTGGTTCAATTCCCCCACCCCCttattttgtttgtgtgttgtgATATAATTTGTAGTCCAGTATTGTAGCAAAATATAATTAACTGGATATAAAGTATGTATTGGTTGGAGCTCCTTAGGTAGTGTGGTTCTCCATTTTATTCAGAAGTGAAACTACACTGTGGAAACCTAAATAGAACAATTTATGAGCCTTAGGGTAAAGACACTGACTAATCACTGAAAGTATTTTCATTCCTTTACAACCTACAATTCCTCTTCGCTAAATTAACAAACTGGACATTAACACTTTATCCTTCTAAATAGACACGTTGCACTTGAATTTTTTTAACCCTGACATTTTAGCTGCCATAATGTTAATTAAATAGATTCCTTTTTATAAAAGTTTGAATTCCTATTAAAATTGTTATGCAGTTTGCACTGACCTACAAATGTTTTAAAGTGAAGTTCAATGTCCATGCAGACCATATGTTCAAAACATTTTGATCAACTGAATTGCACTCTTTGGTCCTGTAAAATCCTGTATTTGTGGCCTCTGCTCACCAATTATGTTCTGAAGGGCTGCAATGTAGGCTTATTTTATTGTTGTGTGTGCAGTTTATTTCCCCTTGTTCATACCCCAGATTGGTGGGAGTAGAGTATTCTGCCTATATCGAGCATTTGTGTGAGTAGAATGATTAGGGGCACAGAGGTCACTGGAATTGTGTAGTCCAACCAAATTCCAAGTTCAGGCATAGATAGATAGATTGGCTTAGTCCACTATAATCCAAAGCAATAACTAGTGTTTTGTGCAGGCCATTTCCTATGCCTCAGAGATTAAAAAGCATGCAAATGTGTCATTCAAACAGGTATACTGGAAAGTATTTAATCAACATTTTCTAGTGTAGAAGTTTATTCTGTTAGCTATGAGAAGATTACACGTGGAAGTACAAGAATACTGAAGGAGAAATGTTAATGTCCTATTACACTTGTCACATTGCAGCCTTCAGTTGTAAACCGTTATTTACATTTGTACTTCACTGGATAGATGGCACtcattttcataaattcatcTTTGTTAAATTTCAAATGTGCCCTACTGCGTCACTAGAAACAAGTAAAAAAACATATTTGCAAATGTGTGAATGTTTTCTTGTTTGTGTGAACTGGTTCGATGGAGGCCTTTCATTCCCTGAACTTTCTGAGATGGGGGTCAGTTTTTCATCACAGATGCTGCAGAAAGAGGTAAGAACTATGCCATAATACTTAGTTGTCTTTTGGCTTAATGTTATGTTAAGTCACATACTGAAATCAATCAGAATTTATCAATTGGATTTCAGTTTTGTCATTGACGAAATGTTATTTTAATTCCAATGGGGTTTACTTGCCATTTCTGAAAAGATTTGCAGAGTGTAGTGATTAACCCAGTCAAGAACTGGTATTGGATGTTAGTCAGATTCTCAGAcctgagaatagaggagagaggtagtAGTTAAGACTGAGCAGACAACTTTCAATGATGCACTGTGGAAATCAACTGATATTAATTCATTCTTACCGGATGGGAGTGTTAATAATGGTGGGTGTCCCTATTCGGAGAGATAAAAACGATTAACATTTcagtcccacatttgacagtttGATGTTCCAAGTGATTAACAGAAAAATAAAGTATTGTTCCATGAATGGATAACCATGGCATGCTAAG

Function

GO: NA

KEGG:

id description
K24883 HOMEZ; homeobox and leucine zipper protein Homez

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405562 lncRNA downstream 8153 10022298 ~ 10022640 (-) True G2103153
TU2405557 lncRNA downstream 12850 10017727 ~ 10017943 (-) True G2103148
TU2405533 lncRNA downstream 56678 9969061 ~ 9974115 (-) False G2103127
TU2405580 lncRNA upstream 17318 10058349 ~ 10059960 (-) True LOC118944863
TU2405639 lncRNA upstream 134898 10175929 ~ 10176164 (-) True G2103229
TU2405641 lncRNA upstream 142877 10183908 ~ 10184116 (-) True G2103231
TU2405643 lncRNA upstream 144960 10185991 ~ 10186191 (-) True G2103233
TU2405644 lncRNA upstream 146477 10187508 ~ 10187723 (-) True G2103234
XM_021589014.2 mRNA downstream 22864 10004226 ~ 10007929 (-) False LOC110508476
LOC110508158 mRNA downstream 90288 9938973 ~ 9940505 (-) True LOC110508158
LOC110508157 mRNA downstream 93480 9897773 ~ 9937313 (-) True LOC110508157
XM_036966297.1 mRNA downstream 146822 9743940 ~ 9883971 (-) False LOC110508473
XM_036966293.1 mRNA downstream 146826 9739138 ~ 9883967 (-) False LOC110508473
XR_005040255.1 mRNA upstream 17325 10058356 ~ 10060043 (-) False LOC118944863
XM_021589020.2 mRNA upstream 27835 10068866 ~ 10076428 (-) True dhrs1
XM_021589022.2 mRNA upstream 111945 10152976 ~ 10174843 (-) True mmp14b
XM_021589023.2 mRNA upstream 137365 10178396 ~ 10195465 (-) True LOC110508484
XR_002471318.2 mRNA upstream 196324 10237355 ~ 10244790 (-) True LOC110508487
TU2405551 other downstream 22890 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 218935 9796494 ~ 9811858 (-) True LOC110508473
TU2405415 other downstream 253885 9776619 ~ 9776908 (-) True G2103015
TU2405308 other downstream 461742 9567966 ~ 9569051 (-) True G2102910
TU2405103 other downstream 775627 9231694 ~ 9255166 (-) False G2102731
TU2405613 other upstream 72397 10113428 ~ 10115397 (-) True G2103203
TU2405667 other upstream 165032 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 666981 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 845167 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 1458095 11499126 ~ 11500072 (-) True G2105419

Expression Profile