RNA id: XM_021589022.2


Basic Information

Item Value
RNA id XM_021589022.2
length 3605
RNA type mRNA
GC content 0.46
exon number 10
gene id mmp14b
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10152976 ~ 10174843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caAAGGCCTCGCGGGACTGTCAAACTAGCAGTTGCtgtgtggcagagagagagggggtgaagaaagAAGAATCAAAACATCCCGACCATCCCGACACGAGAAACATTTAGGGGAAGCTGCAaataaatatataggcctaaaacgCTGAGACGGCGACAAAGGGAAACAAGGTTGTCGTTTATAATTATTGTGGAATGTGAGCTGTTAAAACGTTGCCAAATTATTGATGCAACTTCTCGCAGCTCTTTAATCAAGTTACTCCTCAGTTTATGTTTACAAATACATCTGGTTTTGATTTTTAGAACAAGTAAAGAATGCCCGGCTTTCATCAACGCAAATTGCTGTttaaacaattatatttttgatCCATAATTTTGAATTTGGAAGCGTTCTTCCAACCGGTGTAGCTACTTCAAGAATCAAGGAAAAGTGATACAGGGAAAACAGAAGCTATTTGGTCGTTTTTGCCGGTGTCGTGGTCGAGGAATGGCACTCCGTGTAGAGGCATATGCCCAATTGCTGTTGCTCGTGTTGGCATTGGACCTGAGCGTGCAAGGAGCGGCGCCACAGTATCAAAAACCAGAGGTGTGGCTGCAGCAGTATGGCTACCTGCCCCCAGGTGACCTGCGGACACACGCTGCCCGTTCCCCTCACTCCATCACCACGGCCATCGCAGCCATGCAGAGGTTCTACGGCCTGACCATCACCGGCTCCATTGACCCCAAAACTGTAGAGGCAATGAAGCGGCCACGCTGTGGAGTTCCAGACAAGTTCGGGACTGAGCTGAAGAGTAACCTGAGAAAGAAGCGCTACGCTATCCAGGGCCTGAAATGGGATAAGACTGATCTCACCTTCTGtATACAGAACTACACCCCTAAGGTGGGGGAGTATGAGACCCATGACGCTATCAGGAAAGCCTTCAAGGTGTGGGAGAGTGTGACCCCTCTACGCTTCCGGGAGATCCCCTACAGTCACATACGGGACAAGGTGGAGGACTTTGCCGACATCATGCTCTTCTTCGGTGAGGGTTTCCATGGCGACTCCAGTCCCTTTGACGGCGAGGGGGGTTTCTTGGCACATGCCTACTTCCCCGGTAACGGCATAGGGGGAGACACACACTTTGACTCTGCAGAGCCTTGGACGGTCGGCAACAGTGATCTGTCAGGTAATGACGTGTTCCTGGTGTCGGTACATGAGTTGGGTCATGCCCTGGGTCTGGAGCACTCCAACGACCCCTCTGCCATCATGGCTCCATTCTAccagtggatggagacagagaactTCCAGCTGCCTGAAGATGACCTCAGGGGAATACAGCAAATCTATGGGGGTAGATCAGGTGGTGGCCCCCGCCCTCCCCCACCTAGCCCACGCTCCCCTCACCACCCACCCAAACCCACTCACACCCCATACAACCCTCGCTTTGGCCCCGACATCTGTGAGGGACACTTTGACACCATCGCCATCCTCCGAGGAGAAATATTTGTCTTCAAGgatAAGTGGTTCTGGAGAGTCCGTAACAACGCAGTTCTGGACGGATACCCAATGCCAATAGGCCATTTCTGGAGAGGCCTGCCATCAAACATCAATGCTGCTTATGAAAGGGATGATGGGAACTTTGTATTTTTCAAGGgagaCAGGCACTGGGTTTTCAAGGAATCTATTCTGGAGGATGGTTATCCCAAGTCTCTAAAGGAGATGGGCAGTGGTCTACCCAAAGACAAAATAGATGCCGCCCTCTTCTACACCCCCACCGGCAAGACATACTTCTTCAGGGGAAACAAGTACTATCGTTACAATGAGGACTCACGCTCTGTGGACCCTGAATACCCCAAACCAATCAATGTGTGGCAGGGCGTCCCAGACAATATTAAAGCTGGCTTCATGAGCAGAGACCAAGGACACACCTACTTCTACAAAGCCAATAAGTATTGGAAGTTCAACAACCAGAAGCTTCGTGTAGAGCCTGGATTCCCCAAGTCTGCTCTTAAAGACTGGATGGGTTGTCCAGAGGAGGACCCCAAGACCGACGGAGGAAGGGGGGGTGGAGGACATGACCgggaagacagagaggaggatagagatgaGACAGAAGTAATCATCAtcgaggtggaggaggaaggaggatcTGGCGGAGGGGCGGGTGCGGCGGCAGTGGTGGTTCCCCTCATGCTGTTGGTGTGTGTGATCCTCACTCTGGGGGCACTGCTGTTCTTCCGCAGGTATGGCACCCCACGCCGTCTCCTGTACTGCCAACGCTCCCTACTGGACAAggtgtagaggggaggagagggagaggagagaaagggaggagagagaggaggttgatgAGTTGAGAGGGGctgtaggggagagaagagagcaaATAGAGAGTAATACTAGTGGAGATAAAAAGAGAAGTCTGTGGACCTTGAATGAGGGTTAGCCAGAGCCAAGATATACTTGTTAGCTATGGCTAAAATATTCCTACCACTACCAACTTAAACATGGAGGAGATTCCTTTTTCTCTTCCACTCCCACTCTTTTCTGCCATTTctgtcccctcttctcttccctcctttctctctcgttctttctgtGGTTGTTGACTCCAGCTCTTCGCTGTTTGTTTAGCCTTTTTAAATGTCCTTTTTTTTAGTGGGTGTCGTCAGTGTTTGTGTCCTTGCGAATTTCAGCTTTGAACATGACTATGTCCAGTGCCTCCATCTGCCCATATTTAGTGTCGACTGTGTCAAAGAATGCAATCGGCATCATTTCATGTCGTGTGGATGTTCTGCTCCATGATAGTACATGACGCTAGATTCTGTCAAAGCCTTTTACCCATTAAGCGTTGTCTCCTATATCTCAGTTCTATCACATGAACTATGAACTGTCTAAAGAGAGGGGGTATATATCAGATAAGTCTATTCACTAAACACTCAATGAAACACGAAAAGTGCTGCAGTCAATGCGCGCCCCCAGTCCATCCTTACCACAATTTCATATCTGGATATTTCAGAGAGCCAGTATTGAACATAAAAAAATGCCAAATTATACACCTAGTGTCCCTTTGAAGCATATATAACACTCATTTGAAAGCTGAGCAATTTGTCTGTGTCATTAATATTCCTTTATGTCATGCAGTGTTttagtgattattattattatgattattattatccaggatgttgtcattattattatgtCTATTACTATTGTTATTGTTGTTCTCCATGTATAGAATGTGTTTGTGTACATTGTCATTAAATGTCCTGCTGGACAGGGAACTACATTTTGAAAGTGGCCTTAATTTTATATTCATTTTGGGGGAAAGTGAATGGGATGGGGATATTATTTTTGAAACTTGATTGTTTTTCCGTCTCAATGCAATAAATTGAAGATATGGAAATGACTCCTTTTTGTCAATGCACTTGTTTACAGTTCTCAATTCATggtgctgtttttttttatttttcagggATGAGAGGGTTTACTAGTAGTAAAAACaataataattatattaatttTTATGATAATAATGATAACTATCGGAACTATTTGAATGAGATTGTGCCTGTCTTTTTCACTTTTACACTTTTctttcaaataaaatgttttgaaaAGTT

Function

GO: NA

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2405580 lncRNA downstream 93016 10058349 ~ 10059960 (-) True LOC118944863
TU2405562 lncRNA downstream 130336 10022298 ~ 10022640 (-) True G2103153
TU2405557 lncRNA downstream 135033 10017727 ~ 10017943 (-) True G2103148
TU2405534 lncRNA downstream 178861 9969061 ~ 9974115 (-) False G2103127
TU2405639 lncRNA upstream 1086 10175929 ~ 10176164 (-) True G2103229
TU2405641 lncRNA upstream 9065 10183908 ~ 10184116 (-) True G2103231
TU2405643 lncRNA upstream 11148 10185991 ~ 10186191 (-) True G2103233
TU2405644 lncRNA upstream 12665 10187508 ~ 10187723 (-) True G2103234
TU2405647 lncRNA upstream 15795 10190638 ~ 10190863 (-) True G2103237
XM_021589020.2 mRNA downstream 76548 10068866 ~ 10076428 (-) True dhrs1
XR_005040255.1 mRNA downstream 92933 10058356 ~ 10060043 (-) False LOC118944863
XM_021589019.2 mRNA downstream 111945 10030793 ~ 10041031 (-) True LOC110508478
XM_021589018.2 mRNA downstream 111946 10030793 ~ 10041030 (-) False LOC110508478
XM_021589014.2 mRNA downstream 145047 10004226 ~ 10007929 (-) False LOC110508476
XM_021589023.2 mRNA upstream 3553 10178396 ~ 10195465 (-) True LOC110508484
XR_002471318.2 mRNA upstream 62512 10237355 ~ 10244790 (-) True LOC110508487
XM_021589036.2 mRNA upstream 117168 10292011 ~ 10301313 (-) False LOC110508490
XM_021589034.2 mRNA upstream 117168 10292011 ~ 10301367 (-) False LOC110508490
XM_021589037.2 mRNA upstream 117168 10292011 ~ 10301367 (-) False LOC110508490
TU2405613 other downstream 37579 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 145073 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 341118 9796494 ~ 9811858 (-) True LOC110508473
TU2405415 other downstream 376068 9776619 ~ 9776908 (-) True G2103015
TU2405308 other downstream 583925 9567966 ~ 9569051 (-) True G2102910
TU2405667 other upstream 31220 10206063 ~ 10206676 (-) True G2103257
TU2406439 other upstream 533169 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 711355 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 1324283 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 5364925 15539768 ~ 15554897 (-) True G2109663

Expression Profile