RNA id: XM_021589038.2



Basic Information


Item Value
RNA id XM_021589038.2
length 2783
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110508491
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10301488 ~ 10306620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGGCGCGAGACGCTGAGCGAACTTGGTGATGGAACGTCAGAGACACGCCCCCAGCTTCTCCTACCATGTGGTTGatataaacacagttcactttcgtGACAAGCTTTTTGgcttcaacattttcttaactgtGCGCTCATTAACAGCTGTCAGCATGTCTGTGTCCGTCGACGTGAATTTTCAAACCCAGATTGTGTCTGTTTTGGATTCACTTACAAAGGTGGCCGTCGTGGAAATAACGAAACTGTTCGAGTGTCAATTCCTTGCTAAAGGAACCACCGTTCTCATTGAAGGGCAGACAGAGCAAAATGAAATCCTGCAAACGGTGGACTCTGTCAAAAAGTCAGGCAAGAAATGTCTTCGCAGTATCGGAGTTCAAGTGGATGAGGAGTTAACTGCCCCAAAACAGTGCTCCTTCTCAAAGGTGAGCAGTGAGGAGGGTCCTGCACATCATATCACCCTGCTGGAGGCTAATCAGCCTGCTGACCTAAAGTGCTATGTTCTAGAACACAAGGATGTGGAGATGGTGAAGGGGAGCAGTCTGGAACCAGAATCCCCAACAACCACTGAGACAGAAGGAGAACAAGTTATATATTCCACCCCTAAGTATCCAAACCACCTCTCTGGTACTGTTCAAAGCTCCCCAACTAAGCAGAAACTCCAGCCCCTCAAGACAGAATCAGAGAATGGAATGAACACAGAATGGGTGACTAAAGTCTTCTGTCCAATGGTCCCAAAGGCAGAAGAGCAGTATTCAACACCACAGGCAAATTGTAAAGAAAAGCCTATCCAGGTGGAGCCCCAGCAGGCCAGTGTCAGCACCGCAAAGGAGACAGCCTATAGCCCGTCCACCTCAGATGGTGCTTTGGCTCCTGAACAGGCTAAGAGAAAGTTGACATCTATGGGTGCATTGGACCCTCCCTCTGCGGTGAAGAATAAAAAGGTGGACTTCAAGCTGGACCAGACCTCCCTGGAGCACAAATTGACGAGGGCCTGCTCAGTGCTGCTGGTGAACCTGCTTTTGGTGCCTGGAGGGAAGAAGGCTAATGGGAGCTACTGTCACAACAGCAAGAGGTTCCCCATGCCCAAGGACCTCAAGACCCACCAGGGCCTCCACACAGGCCGGCGCCTTTGCTGCTTCACTCAGTGTGGGAACGATGTCTGGCGGCTTCAAAGCGTCCTCTCCCCGAGCCACTCCTACGGTTGCAAGATCTGCGGGAAGAGTTTCAAACGCAGGAAGATCTTGAGGAGGCACGAGCGCTTCCACAACGGGGAGAAGCCCTATTCATGCTACCAGTGCTCAAAGATGTTCGCCCTGCGGAAAAGCCTCCGCAGGCATGAGAGGTTCCACACGGGGGACAAGCCTCACAGCTGCCTCCAGTGTGGGAAAAGCTTCCGGCTTAGGGACAATCTGAAGGCTCACCTGCGCTTTCACACAGGTGAGAGACCTTTCACCTGCTCCTTCTGCTCCAAGAGCTTCAGAATCCTcaggaaccttgaggaacacagcGTTGATCACTTGGGAGTGACAGCGAAGTAGCTCACTTTCCGACAAAGAGAGCTGTTCCTAAGCATTAGCACCTAGCAGCCTTTATCGGCTGGTTGTGTAAGCCGCATTACAAAGCTTATCTACCTCTAACGGAAACTACTAAATGTCCATTCCTCATTTATAACCTATCATTCAGCATTGGTTGTTTTTGAACGATACTATGATTGTAAATAACCATTATGACGGAAGATGGGGAGGGTGGAAAGATCTGAAATGAGGCAGTCAACCATCCTGCGTAGGTTTGGATTGTCCAGAATGATCATCTGAGTAAAGCTTTAGTGGACACTGATGTTATTAATAGCCATAATGTTTTTCCAGGCACCGATTATGCCTAGTCCTAAACCAAAAAGTTATTGGAATGGAGATTTTGTATTGAGCATGCTGGACTAGGCTTTAATCTGGGTCTGGAAAACTGGCCCTAGGTCTTTACACTGTATTTCTTTGGCCAAAACACTATGGACATGGAACTGTTGCATGTCTCTTTGAAGAATACATAGGCCAGGGCTGAGCTTAGTGTGAGGTCTTTCTCAGACAATCTGTTTTCATGATACATCTTTTCACTTTGTAGTAAATACAAACAGATTGTTCCTTTGTGTATTTTGGTTTGTAAGTAGTTGTAAAGGTAGGCTTAAATTTGCATGTTTGTTTTATACTTTTATCTTGAACCATTATGCCAAATACTATAGTAATGCAGCAACTGTCTCTCCTTATCTTTGTTCATAATGCTGTTTTTGTCAGGAAAACACCATACTTAAACTTCCCTGACATCTACACAGGAAAAAGTATCTAAAGACACATGACTTAGTTTAAAATTAAAAGAATGGGAAGTATGATGCAGCCTTTAATTTTGCAAATACACATTTGAATGTAATCTGTAGAGAGAAGTTATTTCATATCATTTTTTGATTGAAGCTGATGTCTCTGACTTGTGATTTGTTGAAGATATAACAAATATGACTACATGGCTTTTAATTATAATCCAaaattgtttggggggggggagaatgttcatccattttagaataaggctgtaacataacatgtggaaaaagtccaggggtctgaaaactttcctaatgcactgtaattCCCTGCGTTTGTGTGAAAAGGTCAGTTTTATGGTATGTACTGTGGTTGGCCCTTTTGTCTGGCAATAAAAAAACACCACTTGTATTATTGATTTCACTAATGCCTTATAAAAATTGACACATCAGAAGTGTCTGGTTGTGTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2406111 lncRNA downstream 13608 10285253 ~ 10287880 (-) True G2103629
TU2406140 lncRNA downstream 68412 10232818 ~ 10233076 (-) True G2103649
TU2406138 lncRNA downstream 69908 10231362 ~ 10231580 (-) True G2103647
TU2406121 lncRNA downstream 78963 10222297 ~ 10222525 (-) True G2103639
TU2406109 lncRNA downstream 89541 10211731 ~ 10211947 (-) True G2103627
TU2406196 lncRNA upstream 18338 10324958 ~ 10325299 (-) True G2103695
TU2406209 lncRNA upstream 25040 10331660 ~ 10339065 (-) False G2103707
TU2406210 lncRNA upstream 25040 10331660 ~ 10339065 (-) True G2103707
TU2406197 lncRNA upstream 34961 10341581 ~ 10385478 (-) True G2103696
TU2406240 lncRNA upstream 79619 10386239 ~ 10386822 (-) True G2103735
XM_021589035.2 mRNA downstream 120 10292011 ~ 10301368 (-) True LOC110508490
XM_021589034.2 mRNA downstream 121 10292011 ~ 10301367 (-) False LOC110508490
XM_021589037.2 mRNA downstream 121 10292011 ~ 10301367 (-) False LOC110508490
XM_021589036.2 mRNA downstream 175 10292011 ~ 10301313 (-) False LOC110508490
XR_002471318.2 mRNA downstream 56698 10237355 ~ 10244790 (-) True LOC110508487
XM_036966100.1 mRNA upstream 91 10306711 ~ 10323084 (-) True LOC110508492
XM_036966610.1 mRNA upstream 80733 10387353 ~ 10408028 (-) False LOC110508496
XM_036966611.1 mRNA upstream 80733 10387353 ~ 10408028 (-) False LOC110508496
XM_036966614.1 mRNA upstream 80733 10387353 ~ 10408028 (-) False LOC110508496
XM_036966615.1 mRNA upstream 80733 10387353 ~ 10408028 (-) False LOC110508496
TU2405667 other downstream 94812 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 186091 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 293585 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 489630 9796494 ~ 9811858 (-) True LOC110508473
TU2405415 other downstream 524580 9776619 ~ 9776908 (-) True G2103015
TU2406439 other upstream 401392 10708012 ~ 10708499 (-) True G2103920
TU2406504 other upstream 579578 10886198 ~ 10894080 (-) True LOC110508522
TU2408125 other upstream 1192506 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 5233148 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 5297065 15603685 ~ 15604463 (-) True G2109705

Expression Profile