RNA id: TCONS_00055372



Basic Information


Item Value
RNA id TCONS_00055372
length 892
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_028544
representative False

Chromosome Information


Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9769050 ~ 9781132 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTAACACGATCTTGGGTGTGTTGTGTTAGTTAAAAAAGAGCCATGGCCCTTTAAAAGCTTCACACGCTGATGTGTGACGCTGTTTACCTGTCGGCAGGTGTATGCGGGTGTTGTTACTGAAGTATCCAAAAGAAGTGTCAGTCGGGGTGAGATGTGATGGGAGAAGCTTCGAAATGACGAAAAGTCCTGTTTGATGACCTCATTTCATCATTTATTTATGTTTCTGCAGAGGAAATAAATAGCCTTATTAAAATAAAGATGGCATTAAAGCGATCGTCTTCCATGAAGACCCAGCTAGTGGATGCCATCCAGCTCGAAGAAGTGGAGATGGAGGAAGAGATCACCACCACAAGCAACAATAACAATCCTGTTGAACCTGCTCAGGTCAAAGAGCCGAAATGCTACACCGTGGAGGAGGCTGTGGAGAGCATTGGTTTCGGATGTTTCCATATTCTGCTTTTTGTCATCATGGGCAGTGCCAATATAGTGGAAGCGATGGAGATCATGTTGTTGGCTGTGGTTTCTCCTGAGATCCGCTGCGAATGGCATCTGGAGGATTGGCAAGTGGCCCTTGTCTCCACGaTGGTGTTTTTTGGTTTCATGGTTTGTGGGGTCCTCTGTGGTTACATTGCTGACAAATACGGACGCTGGAAGGTGGTGTTTGGTGGTTTTGTATGGGCGTCATATTTTTCTTTTCTCACTTCGTTCTCTACATCATACGGCTGGTTCATCTTTCTGAGATGTATGGTGGGCTGCGGAGTGGCAGCAACATCTCAAGGGTTTGTTTTGAAGACTGAATTCATCCCGGCCAAATACAGAGCATACCTGTTGCCTCTTGCCTCAATCTTCTGGATGATGGGATCCATATTAATTATCGTTCTGGGTATGACTG

Function


GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-109 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hatching gland; myotome; pectoral fin musculature; polster; and somite. Orthologous to human SVOPL (SVOP like).

Ensembl:

ensembl_id ENSDART00000150304

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00055371 lncRNA downstream 2199 9769071 ~ 9773130 (-) False XLOC_028544
TCONS_00055359 lncRNA downstream 123361 9649283 ~ 9651968 (-) True XLOC_028540
TCONS_00055357 lncRNA downstream 167875 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00058068 lncRNA downstream 253387 9514548 ~ 9521942 (-) True XLOC_028534
TCONS_00058067 lncRNA downstream 385681 9388818 ~ 9389648 (-) True XLOC_028533
TCONS_00055375 lncRNA upstream 17025 9798053 ~ 9801647 (-) True XLOC_028545
TCONS_00055377 lncRNA upstream 38329 9819357 ~ 9822519 (-) True XLOC_028546
TCONS_00058069 lncRNA upstream 125053 9906081 ~ 9909371 (-) False XLOC_028550
TCONS_00055387 lncRNA upstream 126841 9907869 ~ 9909371 (-) True XLOC_028550
TCONS_00057327 lncRNA upstream 565710 10346738 ~ 10348612 (-) True XLOC_028551
TCONS_00055366 mRNA downstream 10560 9724192 ~ 9764769 (-) False XLOC_028543
TCONS_00055367 mRNA downstream 10562 9724236 ~ 9764767 (-) False XLOC_028543
TCONS_00055368 mRNA downstream 46599 9724804 ~ 9728730 (-) True XLOC_028543
TCONS_00055365 mRNA downstream 52761 9696965 ~ 9722568 (-) True XLOC_028542
TCONS_00055362 mRNA downstream 107949 9653424 ~ 9667380 (-) False XLOC_028541
TCONS_00055374 mRNA upstream 3273 9784301 ~ 9810999 (-) False XLOC_028545
TCONS_00055376 mRNA upstream 32725 9813753 ~ 9822519 (-) False XLOC_028546
TCONS_00055378 mRNA upstream 43035 9824063 ~ 9836342 (-) True XLOC_028547
TCONS_00055379 mRNA upstream 62895 9843923 ~ 9852318 (-) False XLOC_028548
TCONS_00055382 mRNA upstream 70782 9851810 ~ 9867843 (-) False XLOC_028548
TCONS_00055328 other downstream 1187421 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 1633863 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1899385 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 880533 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 1825730 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 1827168 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 2494086 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 2632391 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile


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