Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00055373 |
| length | 793 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | XLOC_028544 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 9769050 ~ 9781132 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0055085 | transmembrane transport | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0022857 | transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041114-109 | Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hatching gland; myotome; pectoral fin musculature; polster; and somite. Orthologous to human SVOPL (SVOP like). |
| ensembl_id | ENSDART00000134280 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00055371 | lncRNA | downstream | 3130 | 9769071 ~ 9773130 (-) | False | XLOC_028544 |
| TCONS_00055359 | lncRNA | downstream | 124292 | 9649283 ~ 9651968 (-) | True | XLOC_028540 |
| TCONS_00055357 | lncRNA | downstream | 168806 | 9604366 ~ 9607454 (-) | False | XLOC_028539 |
| TCONS_00058068 | lncRNA | downstream | 254318 | 9514548 ~ 9521942 (-) | True | XLOC_028534 |
| TCONS_00058067 | lncRNA | downstream | 386612 | 9388818 ~ 9389648 (-) | True | XLOC_028533 |
| TCONS_00055375 | lncRNA | upstream | 17122 | 9798053 ~ 9801647 (-) | True | XLOC_028545 |
| TCONS_00055377 | lncRNA | upstream | 38426 | 9819357 ~ 9822519 (-) | True | XLOC_028546 |
| TCONS_00058069 | lncRNA | upstream | 125150 | 9906081 ~ 9909371 (-) | False | XLOC_028550 |
| TCONS_00055387 | lncRNA | upstream | 126938 | 9907869 ~ 9909371 (-) | True | XLOC_028550 |
| TCONS_00057327 | lncRNA | upstream | 565807 | 10346738 ~ 10348612 (-) | True | XLOC_028551 |
| TCONS_00055366 | mRNA | downstream | 11491 | 9724192 ~ 9764769 (-) | False | XLOC_028543 |
| TCONS_00055367 | mRNA | downstream | 11493 | 9724236 ~ 9764767 (-) | False | XLOC_028543 |
| TCONS_00055368 | mRNA | downstream | 47530 | 9724804 ~ 9728730 (-) | True | XLOC_028543 |
| TCONS_00055365 | mRNA | downstream | 53692 | 9696965 ~ 9722568 (-) | True | XLOC_028542 |
| TCONS_00055362 | mRNA | downstream | 108880 | 9653424 ~ 9667380 (-) | False | XLOC_028541 |
| TCONS_00055374 | mRNA | upstream | 3370 | 9784301 ~ 9810999 (-) | False | XLOC_028545 |
| TCONS_00055376 | mRNA | upstream | 32822 | 9813753 ~ 9822519 (-) | False | XLOC_028546 |
| TCONS_00055378 | mRNA | upstream | 43132 | 9824063 ~ 9836342 (-) | True | XLOC_028547 |
| TCONS_00055379 | mRNA | upstream | 62992 | 9843923 ~ 9852318 (-) | False | XLOC_028548 |
| TCONS_00055382 | mRNA | upstream | 70879 | 9851810 ~ 9867843 (-) | False | XLOC_028548 |
| TCONS_00055328 | other | downstream | 1188352 | 8587787 ~ 8587908 (-) | True | XLOC_028518 |
| TCONS_00055327 | other | downstream | 1634794 | 8141349 ~ 8141466 (-) | True | XLOC_028515 |
| TCONS_00055310 | other | downstream | 1900316 | 7870665 ~ 7875944 (-) | False | XLOC_028507 |
| TCONS_00055389 | other | upstream | 880630 | 10661561 ~ 10661677 (-) | True | XLOC_028553 |
| TCONS_00055432 | other | upstream | 1825827 | 11606758 ~ 11606855 (-) | True | XLOC_028574 |
| TCONS_00055433 | other | upstream | 1827265 | 11608196 ~ 11608283 (-) | True | XLOC_028575 |
| TCONS_00055457 | other | upstream | 2494183 | 12275114 ~ 12286066 (-) | True | XLOC_028592 |
| TCONS_00055464 | other | upstream | 2632488 | 12413419 ~ 12433016 (-) | True | XLOC_028596 |
