RNA id: TCONS_00055375


Basic Information

Item Value
RNA id TCONS_00055375
length 537
lncRNA type retained_intron
GC content 0.44
exon number 4
gene id XLOC_028545
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 9784301 ~ 9810999 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCCAAAATTCATCAGCCCATCGCACCACGACAGAATGTCTGCAACATCAGCAAATCAGAAATGTACCTTGTCCGAGTGGGTATGCCAAGTGGATCATCAGTGGAGTTTGCTAAAAATCATGTTCTTGAGATTCTTCGACGAGAGTTTAACCGTTCAGTGGAGCTAAAGGTCCACAAATATCCACCCAATTTTATCTTTCGGGCTTTTTCTGGTCCACTGGTCTACACTGCTGTGTCAGTCATCAATGCTCTCCGCCAACCAATGCACAGCACATCGTCTTCTACCATTCTCTCTGTTACAACTATATATGCAGTGCCTGATTACAAGCATCAGGTCCACACAGTGCTGCAGTTTGTGCCAGGTCATGTGGATGTGCGTCTGTGTAGCTTTAGCGAGCGAGTGGAAAAGGGGCTCCTCATGGCATATGCGGAAGTGCGCAAACGCTCACAAGAAAATGGGAATTTCACAGTCCATGTATGAActctttttattaaaacaatatttgcaGCATTTACACATCacttttctttttcaca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-96 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 86. Orthologous to human KIAA1549 (KIAA1549).

Ensembl:

ensembl_id ENSDART00000150407

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055371 lncRNA downstream 24923 9769071 ~ 9773130 (-) False XLOC_028544
TCONS_00055359 lncRNA downstream 146085 9649283 ~ 9651968 (-) True XLOC_028540
TCONS_00055357 lncRNA downstream 190599 9604366 ~ 9607454 (-) False XLOC_028539
TCONS_00058068 lncRNA downstream 276111 9514548 ~ 9521942 (-) True XLOC_028534
TCONS_00058067 lncRNA downstream 408405 9388818 ~ 9389648 (-) True XLOC_028533
TCONS_00055377 lncRNA upstream 17710 9819357 ~ 9822519 (-) True XLOC_028546
TCONS_00058069 lncRNA upstream 104434 9906081 ~ 9909371 (-) False XLOC_028550
TCONS_00055387 lncRNA upstream 106222 9907869 ~ 9909371 (-) True XLOC_028550
TCONS_00057327 lncRNA upstream 545091 10346738 ~ 10348612 (-) True XLOC_028551
TCONS_00058070 lncRNA upstream 947330 10748977 ~ 10752573 (-) False XLOC_028554
TCONS_00055370 mRNA downstream 16921 9769050 ~ 9781132 (-) False XLOC_028544
TCONS_00055372 mRNA downstream 17025 9775329 ~ 9781028 (-) False XLOC_028544
TCONS_00055369 mRNA downstream 17104 9769050 ~ 9780949 (-) False XLOC_028544
TCONS_00055373 mRNA downstream 17122 9776260 ~ 9780931 (-) True XLOC_028544
TCONS_00055366 mRNA downstream 33284 9724192 ~ 9764769 (-) False XLOC_028543
TCONS_00055376 mRNA upstream 12106 9813753 ~ 9822519 (-) False XLOC_028546
TCONS_00055378 mRNA upstream 22416 9824063 ~ 9836342 (-) True XLOC_028547
TCONS_00055379 mRNA upstream 42276 9843923 ~ 9852318 (-) False XLOC_028548
TCONS_00055382 mRNA upstream 50163 9851810 ~ 9867843 (-) False XLOC_028548
TCONS_00055381 mRNA upstream 50163 9851810 ~ 9867843 (-) False XLOC_028548
TCONS_00055328 other downstream 1210145 8587787 ~ 8587908 (-) True XLOC_028518
TCONS_00055327 other downstream 1656587 8141349 ~ 8141466 (-) True XLOC_028515
TCONS_00055310 other downstream 1922109 7870665 ~ 7875944 (-) False XLOC_028507
TCONS_00055389 other upstream 859914 10661561 ~ 10661677 (-) True XLOC_028553
TCONS_00055432 other upstream 1805111 11606758 ~ 11606855 (-) True XLOC_028574
TCONS_00055433 other upstream 1806549 11608196 ~ 11608283 (-) True XLOC_028575
TCONS_00055457 other upstream 2473467 12275114 ~ 12286066 (-) True XLOC_028592
TCONS_00055464 other upstream 2611772 12413419 ~ 12433016 (-) True XLOC_028596

Expression Profile

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