RNA id: TU2406504


Basic Information

Item Value
RNA id TU2406504
length 2299
RNA type TUCP
GC content 0.46
exon number 4
gene id LOC110508522
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10886198 ~ 10894141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAAGTATGCGGAAGTTGCCTGCAGcaagtaactagctagctaactagagaAATTGAGGACGACTAGCAAGAAACTGTGCAGAGCCAGATGTGTCTGCTTGGAGAGTCCAGTAGTATGTGTGTACAGTCTGTGACACCAcccctgtttctgtcctggtgacAGAGACCCCTGGGAGCAGGGTCTGCGGTGGCGGTGACATATCTGCAGCTGGTGTGACGACCCAGTCCCCTGAGCAGGCACTGTTTGTGTCGGACCGCATCCTGGCCCAGATTAATAAGATGCGTCTCCGGACAGACTTCTGTGACGTCAGGCTACTGCTGGGAGGCCGGGTGTTCAGTGTCCATAAGCTGGACCTActtttctgctctgttctctggATGGATGAGCGAGGCGGACAAGGAGGAGGTCCAGATCCTGGGGGTGGAGGCACAGATGTTTGAGGTCCTGCTGGAGTTCATATACACAGCTTCGTCCTGTCATGAAATGTACCATTTTACTGAAtgtgtagtgtacagtagtgttCATACACAAAACAGTACATAATACAGATGTCTTTGTGTTTCTTTGAACTGAATCCGTCCAGGCACGATTCATGTGACGGTGGAGAACATGCAGGAGCTGATGGTGGCAGCAGACATGCTGAAGCTGAGTGAGGTGGTGTCTATCTGTGGAGAGTTCCTCAAGAGCCACATGGACCTGTCCAACTGTGTGGGGTTACACCAGTTCCTGGAGCAGATCGCCTGCATGGACGTGCTGGAGTTCACTGAGAACTACGTCCATGTACACTTTCTGGAGgtgtgtgtgtgtgttggatgagTTCTGGGGCCTGTCCAAGGACCAGCTGGTGAAGCTGCTGCGGAGCGAAGATAAGTACCAGGTATTCACGGCAGCCATGGACTGGGTCCTTCAGGACGTGGCCAAGAGGAAGAAACGTGGTGGAGGTGCTGTACCCAGTCAGGTTCCCCCTGCTCTCCCCACAGAGACTCTTCAGGTGGTTTGGTTGGATCAGAGATTGGGAAGACGATGGAGCCACATCAAAGACGAGTCCTCGAGTTCATTGTCAACATAGCCTTCACCAGCAATGTGTTTTAACCTTTGAACAGCAGTGGCAGAATGCTGCAGGAGAATCGAATTCTGTTATTTCCCATATTGTACTCATATAGCCAATAGAGGGTGCGACTCAGAATACTTTTTTCATCACCTCACAGAGCATGAACACAGAGCCTTTTTCTAGCTAGAACAGTTTGGTCTTTGCAAAATACAAGGCAAATCACTTTCTGTGGTCTTGCAGGGGAATTGATGGATTTCAGAATGTTTGGATTGTTCTGTTATTTTGGATAGTTTATTGCTTTTATGTAACTGAACTAGAAGTTCATTGTACACAGACAAACAGATGACTGGGAGACTGCCAACAGGGGGACTGTTGATTCAACTGAGCTAGCAAGACTGCAGTACCTACTCCGTCAGTTACATGGCagacctgtctgtctccatcACTCAGTCATATACTTCCTGCTCCGTTTCAGAGGTGTGCCAGTGTTTCTGGAGGGTAAATAGCTTTCATTGTTTACTGTACTTTCTCTGCTAATTTGTGTGGACTTAAACATTGGTACTTTCAGGACCATTACGTTTTTACATAAGTGTAAAGGATTGTTTGTCCGTTTTTGAGAATGGGATAGCTGTCTGTCACTGATATCCTGTCAATTGTTTCAACCTGTGCACTTTGAGTGTCACATTTAAAATTAACACCAAAACTATTAACTTACATGGGAGTTGTCCATTATCCATGTCGACTTAAGGTAGACTGACTGCTAGTGCGATGGGCTTCATGTGTCTACACGGAGTTGTATTAAAACCTTGTACTGCACTTGATGACAGAAGCAAAAGCTACTACGAGCAAAATGTTACTTGTGGTCCTCATGTCAAACTGTTATGGTTGGAAATGCTAACCTTACAGTAACATTCTGCTGTGCTTACGGCATTTGTTAAACGATCACTAAACGTTGATGTTTTAAGCTGCAATTACTCTAGTACAACCGTTGCACTCAGTATTTGTTTAATATGGCTCATTGACCGAAATGCAGCCATATAACACCACTGTAAATATCAGTGCCTTTTTAGTCAGTACACAGTAGTCACCATTttaaaacactgagaaatgtCCCCTTGGTTGGAATGAGCTTGTATCACCTTCATTTCAGCAGCGGCACTAGATTACAACGTGAAATTGTATTTCACCACTCACCTGTTGAGGTACAGAAGTGTCTAAGTAGCACATTGATTAAAAGGAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2406522 lncRNA downstream 51551 10832777 ~ 10834647 (-) False G2103993
TU2406523 lncRNA downstream 51551 10832777 ~ 10834647 (-) True G2103993
TU2406413 lncRNA downstream 61842 10737947 ~ 10824356 (-) True G2103897
TU2406489 lncRNA downstream 75657 10810038 ~ 10810541 (-) True G2103970
TU2406410 lncRNA downstream 128861 10720152 ~ 10757337 (-) True G2103894
TU2407773 lncRNA upstream 59673 10953753 ~ 10953984 (-) True G2105123
TU2407852 lncRNA upstream 179110 11073190 ~ 11073427 (-) True G2105190
TU2407856 lncRNA upstream 184614 11078694 ~ 11078982 (-) True G2105194
TU2407857 lncRNA upstream 185122 11079202 ~ 11079927 (-) True G2105195
TU2407859 lncRNA upstream 186654 11080734 ~ 11081223 (-) True G2105197
XM_021589085.2 mRNA downstream 1608 10869116 ~ 10884590 (-) True LOC110508520
XM_021589084.2 mRNA downstream 1739 10869116 ~ 10884459 (-) False LOC110508520
XM_021589087.2 mRNA downstream 1739 10869116 ~ 10884459 (-) False LOC110508520
XM_036966705.1 mRNA downstream 1979 10869116 ~ 10884219 (-) False LOC110508520
XM_021589082.2 mRNA downstream 33324 10845215 ~ 10852874 (-) True LOC110508519
XM_021589089.2 mRNA upstream 11447 10905527 ~ 10911512 (-) True LOC110508523
XM_036966953.1 mRNA upstream 78690 10972770 ~ 10975408 (-) False LOC110508524
XM_021589090.2 mRNA upstream 78690 10972770 ~ 10985411 (-) True LOC110508524
XM_021589096.2 mRNA upstream 97015 10991095 ~ 10994082 (-) False LOC110508527
XM_021589095.2 mRNA upstream 97015 10991095 ~ 10994103 (-) True LOC110508527
TU2406439 other downstream 177699 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 679522 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 770801 10113428 ~ 10115397 (-) True G2103203
TU2405551 other downstream 878295 10004226 ~ 10007903 (-) True LOC110508476
TU2405361 other downstream 1074340 9796494 ~ 9811858 (-) True LOC110508473
TU2408125 other upstream 605046 11499126 ~ 11500072 (-) True G2105419
TU2412752 other upstream 4645688 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 4709605 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 4809256 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 5905310 16799390 ~ 16799869 (-) True G2110939

Expression Profile