RNA id: XM_021589112.2


Basic Information

Item Value
RNA id XM_021589112.2
length 2837
RNA type mRNA
GC content 0.48
exon number 14
gene id ssx2ipa
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11501945 ~ 11514131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTAATACTGGTTGCTTGACAACGCATTCGCCAATGACGGTGGTGTTTGTTTTGAAGCCAGAAAGACGTCCACTTAAAAAAACAAATCTAATTTTGTCAATGTGGGGTCAACTGTACCACAGTGAGTAGAATTATCAAAGTGGCTTGGCATTCACTGTCAAGAACTAGACAGAGAAAATCATTGTACACTCGCATTCGCTTAGAGTTGGCTGTGCTGGCACTAAGGCAGGCTAATCAAGTCAAGATTCTGTTCCAGTGAGTGCAGCCTCCGGTCGGTCAGGTCTGTCATCTCGCGGATGACCTCCCAAAGCGGATGACGCTTTGTTGACATGGGAGACTGGTGGACGACACTAACCATAGAGCCATCAATCGAAAACCATGAGATCTCCAGCATATCAAGAATGATGATGTCCCCCTCGAGGCATCATAACAACCTTCCTACAATGCAGTCCTCCACCATGACACTGTCCAAGAGCTCCTACAACGTGTTAAGTGCCTTCTGCACTGAGGAGAATGTTCCCCAGTGTACCGCATACATCAATCAGGAGATGGACTCTCTGGGTTTCTCCTCTGCCTGTATTGAGGCCAGCTCACCAGAGGGAAGCTGGGGGCTGAACACGGTGCCAGCCCTGAACATGATGTATGAGCTGCTCCAGATGCATCGCCGCAGCCAGCACAGCCTGCAGGAGCAGGAGACAGAGCAGCTGAAGAGCTCCAGTGCCCTGGAACACCTGCAGATGACCAACTCTAGACTCAAGGATCAGCTGGAGCTCTACAAAAGAGAGAAGTCAGGACTGCTTGAGACAGAGAGGCAGTTGCAACTCAAAAACAAGACTCTGCAGAACTGCCTGAAAACAGAAAAAGATGAGGTGCAGAAGCTCCAGAGCATCATCGCCAGCAGAGCCTCTCAGTACAGCCATGATGCCAAGAGGAAGGAGCGGGAGAGCACCAAGCTCAAAGAACGCCTCAACCAGCTACTGGTGGACAAGAGGGATAAGAAACTAGCGATTGATGTATTGAACTACTTGGGACGGGCTGATGGGAAGAGAAGCCAATGGAAGACTGGAAAGGTGGAGGCCAGACATGAGGGGGAGATGTACAAGTCCCTGCTGAGTGACTACGAGGGTCGTCAGAGGGCTCTGATGCTGGAGAACGTTGAGCTAAAGAAGGTGCTGCAGCAGATGAAGTGGGAGATGGTGTCCATTCTTAGTCCTAGGAAATCCTGCTCCAACTCCAGAGGAGACCGTGGGGAAGACAGCCTGGAACGGGCCAGCTCGGACAGAGAGGAGGTTGGTGACTGTAGTAAGGAGACCCTGGATCAGTCATGTGATCATGCTAGGGACCAGTCCTGTGAGCACGCCCGGGAGCAGCTGACCAATAGCATCCGACAGCAGTGGAGGAGACTGAAGAGCCACATGGAGAGACTGGACAACCAGGCCTCCCTGGTACAGCAGAGCCAGCAGTGTGCTGGTAAAGAGCTGGTCCCCAGACAgatccacgaggaggagatggagaggatgaGACTGGAGGTCCAGCAGTGTAAAGACTTCATCCAGACCCAGCAGCAACTCCTACAGCAGCAGCTCAACTCTCCCTGCTATGATGATGAGACTGCTGCTCTGCTGAATGACTGCTACACTCTGGAGGAGAAGGAGCGTCTCAAAGAGGAGTGGAGGCTCTTTGACGAGCAGAGGAGGAACTTTGAGAGGGAGAAACATAACTTTACTGACGCTGCCATTCGCCTCGGCCACGAGAAAAAGGCTTTTGAGGAAGACCGCGCCTTGTGGCTCAAGAATCAATTCTTGAACATGACTTCGTTCGTGGACCGCAAAAGACATTCAACGTCAGAAAATCCTCGTGCCTTGTCAGTCAGTAGTGAACCAGAGATGAGGATCCCCTCCACCTCTGCCATGCTGACCAAATCCCGGACGTACACTGCGTTCTCAACGCCTAAAGCTGCCTCTGCTGCTGGCATGCCCTCCACAGCTGATCTCTACCGTACATTATGCCTCATACCAGACAGGAGCTCCTCTTCTGTAGGCAGTTCAACACAAGGGAGCTGGCAGGAGTCCAACACCATCCACAGTAGAGAAGATACTCCGGTCAGGTCAAAGCACAGACACGGAGGTGGAGACTGCTGCAGTATCTTCTCTTTAGGGTCAGAGGAAAACAGCCTCAACTGAAGACACACTAGTACCATTGTGTTACTGTGGACTCAACAGACAACTCAGATGACAATCCACGGCAGTGTTCATTagacaccaaacagaagaaaatggaCAAACGGGGAAAGAATACCTAGATTTGTCCAATAAGATGCACTCATTTTTTAaatttctgttgcaaaacattttctgttgcgtgccctaatgaacatgacccatgtTTCAATGCCACCACTGCCTTAGGATGCCACGGAGACCTATTTTTGTGCAACTCATGTTGCGTGATCACGGACTAATACTGAACAGTAGCACATTGTCGTTCACCAAAACTTGATTCATTCAGAGAGCACTTTATTGGATATGCCAAtgttttttctttctcttctATATACATTTTTACTAAGCAAAGCATATCCAAGTCTCTAAGCTTTCGCCAAGTGGCAGCCAAACCTTAATATGGGGTTCTGTATCACTACAAATGTTATCCAATTTGGGAAAAGCTATCAATAGGCTACTGACTAGCCATGAGAATGTTTACACATTGTTTTCACTCCAGATATATCATGAATAGTTTAGTGAGAACTTTATTCTAAATGTTTAAAATGAAGCGCTAACATATATGCGGCTTTGAAATTGCAataaaggtttttttttttttttatctatcaATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2406936 lncRNA upstream 16180 11485570 ~ 11485776 (+) True G2104362
TU2406919 lncRNA upstream 37181 11464529 ~ 11464775 (+) True G2104345
TU2406917 lncRNA upstream 40411 11461073 ~ 11461545 (+) True G2104343
TU2406916 lncRNA upstream 41819 11459537 ~ 11460137 (+) True G2104342
TU2406914 lncRNA upstream 43377 11458253 ~ 11458579 (+) True G2104340
TU2406873 lncRNA downstream 87 11514218 ~ 11516512 (+) False LOC110508545
TU2406874 lncRNA downstream 87 11514218 ~ 11516782 (+) True LOC110508545
TU2406978 lncRNA downstream 35357 11549488 ~ 11549814 (+) True G2104393
TU2406982 lncRNA downstream 41640 11555771 ~ 11556004 (+) True G2104397
TU2406986 lncRNA downstream 48681 11562812 ~ 11563335 (+) True G2104401
XM_021589111.2 mRNA upstream 2135 11493633 ~ 11499821 (+) False mcoln3a
XM_036966956.1 mRNA upstream 2135 11493773 ~ 11499821 (+) True mcoln3a
XM_036966817.1 mRNA upstream 10797 11488248 ~ 11491159 (+) False LOC110508540
XM_036966560.1 mRNA upstream 48446 11431567 ~ 11453510 (+) False LOC110508537
XM_021589121.2 mRNA downstream 72 11514203 ~ 11515822 (+) False LOC110508545
XR_005040208.1 mRNA downstream 2675 11516806 ~ 11518250 (+) True LOC118944828
XM_021589124.2 mRNA downstream 14018 11528149 ~ 11546135 (+) False LOC110508546
XM_021589125.2 mRNA downstream 14018 11528149 ~ 11546135 (+) False LOC110508546
XM_021589123.2 mRNA downstream 14194 11528325 ~ 11546135 (+) True LOC110508546
TU2406941 other upstream 11121 11488760 ~ 11490835 (+) True LOC110508540
TU2405988 other upstream 748996 10751291 ~ 10752960 (+) True G2103533
TU2405989 other upstream 783243 10713576 ~ 10718713 (+) False G2103533
TU2405966 other upstream 798936 10702728 ~ 10703020 (+) True G2103519
TU2405871 other upstream 979318 10521731 ~ 10522638 (+) False LOC110508500
TU2407165 other downstream 374985 11889116 ~ 11933092 (+) True G2104555
TU2409059 other downstream 1330256 12844387 ~ 12844904 (+) True G2106278
TU2409335 other downstream 1612831 13126962 ~ 13127231 (+) True G2106543
TU2409340 other downstream 1619268 13133399 ~ 13133761 (+) True G2106548
TU2409341 other downstream 1619763 13133894 ~ 13134485 (+) True G2106549

Expression Profile