RNA id: XM_021589126.2


Basic Information

Item Value
RNA id XM_021589126.2
length 2375
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110508547
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11556591 ~ 11572467 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCCGGCGGGCTACAGTAGCATACTTTGTATCAGTCAAATTCTCGCGATAGTTAGGATTGCCTAATCGCACAACTTGTTGCTTCCTGGGTCTTCCTCTTGTTTGCAAGTTAATTAAGAAGATCGTTTGGACTACTGAATCAAGCAAGATTTCCAGGATTAAAACCCCCAGAGACCCAACCATTTCACTATGTCAGCACTGAGCGGTAAGGTCCAGACGGTGTTGGGTCCGATAGAACCCGACCAGCTGGGTAGAACCATGACCCATGAGCACCTGACCATGACCTTTGAGTGCTGCTACTTCTCTCCGGCCCCGGGGGACGAGACTGTTGCCCAGGCCCCCATCCAGATGAATAATCTATTCTGGCTGAAGCAGAACCCttacagcagCCATGAAaacctgctgctgctgcaggaGACCAATGCTGTGCGGGAAGAGCTGCATGAGTACCGAAAGGCAGGAGGGGGTACCATCGTAGAAAACACTACCCAGGGTATCGCCCGGGATCTGCCCTGCCTCAAACAGCTGGCCAAGGATACGGGCGTCCACATCATAGGAGGGGCGGGGTACTATGTGGACGCCACCCACTCTGAGGCCACCAGGAAGATGACCGTGGAGAAGCTCACAGACATCATCATCAGTGAGATTCTCCACGGGGCGGATGGGACCGAGATCCGCTGCGGTGTGATTGGAGAGATCGGCTGCAGCTGGCCAATCACGGACAGTGAGAAGAAAGTGCTGCAGGCCACTGCACACGCTCAGACCGAGCTGGGCTGCCCAGTCATCATCCACCCAGGACGGAACCCTGGTGCACCGGCTGAGATAGTGCGTCTCCTGCAAGAAGCTGGAGGTGACATCAGCAAGACCGTTATGTCACACCTGGATAGGACCATATTTGACAATGGAGAGCTGCTGGAGTTTGCAAAGATGGGGAGTTACCTGGAATACGACCTGTTTGGAACAGAGATGCTGAACTATGTCTATAACCTGGAGGTGGACATGCCCAGTGACAGCCAAAGAGTCAAGGCCTTGGCGTTCCTGGTCCAGGAGGGATATGAGGACAACATTGTCATTGCCCACGACATCCACACCAAGAACCGTCTCACCAAGTACGGAGGGCACGGCTACTCACACATACTGAAGAACATCGTGCCCAAGATGCTGAGGAGAGGGATCAACCAGACCCAGGTGGACAAGATCCTCATAGACAACCCCAAACGCTGGCTCACATTCAAATGAAGGATCAGAATCAGATCACCCAGAAGATAAAGGCTGCTCCATAGGCCTTTATCCTTTTCAACAGCTACTGAACtcacagttaaaaaaaaaaaagtgtttagaAATGTTTTATTACTTGCAAATTACCAAATGCAATTGATGTCAGAAGTTGACATTTTTTATTCTTGCTACTTGTCTGTGATTTACTGAATCAAAGTGTTCTATTGAGAGGTAAACAAGGTAAAAAAAACCTTGGATTGAACACTAACAACATTCTGATAGCTGAGTGAGGAGTAACGttaaatcaaatatatttgtCACACAATTACTTGCCATGACTGAATCAAAGCTTCAATTCATGTTTGTAATTAATTATTAATACTGTAAGCAAATAAATTAAACCATCCAGCTAGAAAATAAGTCGTAGACTAAATCTAAATGTGGTGCCATTATTATACACAGAAACCAAATGTCATTTAACAAGACAAAGCGACAGTTTCTGCCCCAAACAAACTCAAGGACATGGACTGTACATTGTCTGCACTTGGTGCTCTACTCATAAATATGGTGCTTTTCGTTCTGACTAGTTTTAGTGAAAGCCATAGGAGCTTTGTTTGTAGTAATGACGTTTAACaaagattctttatttttttattgctaAAAGATATTGGGGTACCAAAAGTTTTCTTTATTAGTATGCTTGTTAGATGTGTTTTCGTGATGTCACACTGTGACTGGGTGGCTATAGGAGGGGATCTGGTTGGCTGGTAGGTTGTGATGTCACCCAATGGGTTCCTATGGGAGGGGGCTGGTAGGTCATCCTGAAGGACATGGTCTTCCCTTCTGAGAACAGGTGGCATCACAGAGGGACTTCACCACATGAGcatcgacatcacagcagacaaTACATAACCATTGTGTCACTTTAGGACAGTGTGTGATAGGATTTTAAAAGTTAGGGAGTAGGAGTGTTTTCCCCCCCTGATACATCACCAAATCGAACATCATGGTAGTCTGCCATTCAGAGGAAAATGTGACCCAGGAATATTTTCTTACCATTTTTAATACTCTGCTAAAATTAGAACTGACCAGTTGATTTTTTTTACATGATACATGATAATAATGTACCAAAGTCATTAAAATTGGTTTTGATTTA

Function

GO:

id name namespace
GO:0009056 catabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07048 PTER, php; phosphotriesterase-related protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2408166 lncRNA downstream 9094 11547297 ~ 11547497 (-) True G2105456
TU2408145 lncRNA downstream 10118 11537882 ~ 11546473 (-) False G2105437
TU2408146 lncRNA downstream 10118 11542568 ~ 11546473 (-) True G2105437
TU2408155 lncRNA downstream 29423 11526884 ~ 11527168 (-) True G2105446
TU2408098 lncRNA downstream 66401 11488776 ~ 11490190 (-) True G2105392
TU2408234 lncRNA upstream 89360 11661827 ~ 11662608 (-) True G2105515
TU2408226 lncRNA upstream 105107 11677574 ~ 11739456 (-) False G2105514
TU2408229 lncRNA upstream 105107 11677574 ~ 11739456 (-) False G2105514
TU2408252 lncRNA upstream 112278 11684745 ~ 11685379 (-) True G2105533
TU2408224 lncRNA upstream 158745 11731212 ~ 11739456 (-) False G2105514
XM_021589120.2 mRNA downstream 38145 11515554 ~ 11518446 (-) True LOC110508543
XM_021589118.2 mRNA downstream 38290 11515554 ~ 11518301 (-) False LOC110508543
XM_021589117.2 mRNA downstream 39234 11515554 ~ 11517357 (-) False LOC110508543
XM_021589107.2 mRNA downstream 92513 11459373 ~ 11464078 (-) False LOC110508539
XM_021589130.2 mRNA upstream 17641 11590108 ~ 11631741 (-) False LOC110508549
XM_021589131.2 mRNA upstream 17641 11590108 ~ 11631741 (-) False LOC110508549
XM_021589132.2 mRNA upstream 17641 11590108 ~ 11631741 (-) False LOC110508549
XM_021589133.2 mRNA upstream 17641 11590108 ~ 11631741 (-) True LOC110508549
XM_021589136.2 mRNA upstream 181608 11754075 ~ 11786100 (-) False LOC110508552
TU2408125 other downstream 56519 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 662511 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 848092 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 1349915 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 1441194 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 3967301 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 4031218 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 4130869 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 5226923 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 5683741 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile