RNA id: XM_021589136.2


Basic Information

Item Value
RNA id XM_021589136.2
length 3557
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110508552
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11754075 ~ 11786100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGACAAGCATTTGCTAACTACATAAGCACTCTTTACACACTTTTAATGTCATCTTGACAAAACCGCTGCTCGCAGCTTCGTATAGCTGAAAGCGGACCATGGCGGCTGCCATGAGCAGCAACACATCCACGCTTCAGATCAAGTATTCCAGTATCGAGCATACGCGGAAACGCATAGACCCTCGGAGGAGACAAGCCGCGCTGTCTTTTCTCAGTAACATTTCTTTGGATGGTCGACCCGTGCAAGATGATGCCGACAATCAGATCGAAGAGGATAATTCAATTGAGGCCAGGACTAGACAGAGCCTGGTTTCCACAGCAGAGCGCCCGCTGTACGCGGTTGGCAGTGGCGCTGCGGTAGCAACCTCCACCGCCGCCCAGGCGCTCGCTATTGCAAACCAGGCTCTGATTGCTAACACCCGAGCCAGTTTTGGGATTGGTCCCACCGCTGCAGCTCCAGCATGTACAGATCCGGAAGGGGATGCTTTCGGTCCTTCGATTTTCAGTTCGTCCTTCTCTGTAGTACCAGCCGCGACTAGAAGCAGGCTCCAGACCTACACTCAGGGAGTCGTGCCTGCTGCCCACCCTAGGCAGGCTTCCCAGGTCTGCTGTCTAGAGGGAGGACAGATCGCCAACTCGGGACTGGAACTGCAGAGATCAAGACGGAGGCTCATTTCTCAGCGTTCCTCCTTGGAGACACTGGAAGACATTGAGGAGAACGCCCCTCTACGCAGATGCAGAACCCTCTCAGGTTCACCCCGACCAAAGAGCTTCAAGAAGGTTCACTTCATCAAGAACATGAGGCAACATGATATACGCAATGGAAGGATAGTCCTAATCAGTGGCAGAAGATCCCTTTATAGTGTATTTTCTGTCCTGCCCTATCGAGATTGTAGCCAAGCAGGGGATGTGAAACTGGAAAGCGGGCGGCAGCGGCACCCCTCGGGCGGGGTCAGTGCCAAGGAGATGGTGATCGGGCTGGAGGGAGTGGAGCTGGGGGCCGACGGAAAGaCTGTGTCGTACACCCAGTTCCTGTACCCCACCAACGCCCTGGGCAGCGGACGCAGGAACACCATAGACTCCGTGTCGTCCTTCACTCAGTCTCGTAACGTCAGCCACCGCAGTCTCAGCCTGGCCCGGGCCAACAGCAACCAGAGCAGCATCGACACGGGGAACGATCTGGGGGACTTGATCCGGGAGTACGACCCTAATCTGTTGGACGATCCCCAGTGGCCGTGTGGGAAGCACAAGAGAGTCCTAATCTTCCCCTCATACATGACTACAGTCATAGAGTACGTCAAGCCTTCTGACCTCAAGAAGGACATGAACGAAACATTCAAGGAGAAGTTCCCCCACGTACGGCTGACCCTCAGCAAAGTCCGGAGTCTGAAGAGAGAGATCCGTAAGTTGGCCCAGGAGGAGTGTGGCTATGAGGAACCCACCGTAGCCATGGCCTTCGTCTACTTCGAGAAGCTGGTCCTCCAGGGGAAACTCAACAAGCAGAACCGCAAACTCTGTGCCGGCGCCTGCGTCCTGCTCGCCGCCAAGATCGGCGGAGACCTCAAGAAGCATGAGGTCAAGCAGCTCATAGATAAACTGGAGGAGAGGTTTCGTGTGAACAGGAGGGAGCTGATAGCCTTTGAGTTCCCTGTGTTGGTGGCCCTGGAGTTCAACCTGCACCTGCCTGAGAACGAGGTCATGCCACACTACAGACGCCTCGTCCAGACCTCCTAGCATTAGTGACCCATCAGGAGGAGAACCCACACCCAGCCCTCCTGATCCAGGACCAGGAGACCTACCCTACTGGACCACCCCACCTAACCGAGTCCCACGACCAGCTGGTCTCCCTGCAGCCTGGAGATCCATAGGGCTGGAGCTCCTCTACACTCTACTGCAGACCACATTCATATGTACATTTTCAGATCGAGACTTGAAAGCAGCCAAAGTTACCCATATTCTTACTTCAACATTCTTCTCATACTTTTACTTCTACTTTCTTTAACACTATCTACACCTTCAAAAGATTGGTAGCTGAAAGTTGGCGAAAGCTGTTCATaacaattatttttttgttgttgtaatccTTGCTTGGCATGTTTTGGTTGCCTTATGATTGTCGTGGAGAATGACGCAAACCTGTCGCGTGGCCGATTTTGACAGGACTGTTATCCCAGTAACTCTGTGCTTTTTGAAAAAACGTTTTCCAGTCTCTCCTCGCTAGAAGTGCACTTTTAGAATATTCTAGACATGGATAGAGGCCATTTTCGGAGACTCTTGACTGGGTGAGGGTTGTGAAACAAACTCATTCGGCTCAATTTGAGTTGACTCAAACCCTGGAAGGGAAGTTGCTCTAAATGGCTTTCAATATATTTTCTAATCCATTTTCTTTTTCTGTTTCCCAGCCACCAATACCGCGATCCGCATGCCAATTTATCGACACAACCTTTTTAGATTGCAAAATACTTACAGATTTAATAGGattttatactgtatattattcagTACATTTAAGTATTCTTCTTGTTTTCTACCTGTTGAGTGCTTGCTTTGGACATTATGTGAATGGGCCCACTCTTATCATTCAATGTGTAATCTCCTGTGCTCTATGTTAGAGTGTATCATCGGCACGTTTCCAGTGCTTTTACTGGAGTGGGTGGAAAGGTATCAGAAGTAGGGCATGATGTTGCCAATGCTACAGCTCTGATCTTGAAACTGAACTTGAATTAGCGTCATAATCAAAATATCTGTCAAGGCTTGACTAAGTGTTTGATATGGCAGGTGATGAATTTGTCACGGTCACAATATGATTGTGCCATCTGTCTTTTATGACGAGTGGTTCCAGTTCTAAGGTCACCATTGTTATGGTCCCAGTCAGTATTAAATAGAACGTTGTTGCCCTGCCCACCTGTAGGGAAAATAACCTTGGCTCACAGCAAAAACGTGACCTTTTTTCAAACACAATTTTCTTGTTGTCTGCTTGATTTTGTCAATTTCAAAATAACAGTTAAGGAAAATAAAATATGTCTAAGGATGAAttttcaacattgcctgctcccaagcgttctcactacttagaaaattgtaatattgtagggcttccctcatgccccttttCATGAAGGTGCTAATGTTAGCAAcgtgagtgctagctagctaccaaccagaacattaaactagccaagaccaacaacacaaacaaacggaCTATAAAGTAGTGATTGGAGTTACACACGGACTATACTACATTAGTTAAATGTCTTTCTTACCTGTGATTTAAATGTTTTCCAAACAAATGGCTATgtgtagcctacttggacacTGGGTCACCACAATTTCCCACACTCCCACACTGAATAgtctgaagccacagggctcttctcgcaTGCTCTATTTCCCTACGTGGGACCATTGCAAACCGTAGGTCGGGATTTACCTGGTTACATGTACATAAACatgtacagcgcattcggaaagtattcagacccctttactttttccacattttatgttacagccttattataaaactgatcctcatcaatctacgtaagtattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2408225 lncRNA downstream 7794 11731212 ~ 11746281 (-) False G2105514
TU2408227 lncRNA downstream 7794 11731212 ~ 11746281 (-) False G2105514
TU2408228 lncRNA downstream 7794 11731212 ~ 11746281 (-) False G2105514
TU2408230 lncRNA downstream 7794 11731212 ~ 11746281 (-) False G2105514
TU2408231 lncRNA downstream 7794 11731212 ~ 11746281 (-) False G2105514
TU2408322 lncRNA upstream 3071 11789171 ~ 11789818 (-) True G2105591
TU2408346 lncRNA upstream 39987 11826087 ~ 11826535 (-) True G2105613
TU2408375 lncRNA upstream 96948 11883048 ~ 11885307 (-) True G2105641
TU2408376 lncRNA upstream 99801 11885901 ~ 11886194 (-) True G2105642
TU2408377 lncRNA upstream 100393 11886493 ~ 11887271 (-) True G2105643
XM_021589130.2 mRNA downstream 122334 11590108 ~ 11631741 (-) False LOC110508549
XM_021589131.2 mRNA downstream 122334 11590108 ~ 11631741 (-) False LOC110508549
XM_021589132.2 mRNA downstream 122334 11590108 ~ 11631741 (-) False LOC110508549
XM_021589133.2 mRNA downstream 122334 11590108 ~ 11631741 (-) True LOC110508549
XM_021589126.2 mRNA downstream 181608 11556591 ~ 11572467 (-) True LOC110508547
XM_021589142.2 mRNA upstream 50547 11836647 ~ 11843646 (-) False gata6
XM_021589141.2 mRNA upstream 50547 11836647 ~ 11843781 (-) False gata6
XM_021589140.2 mRNA upstream 50547 11836647 ~ 11843807 (-) True gata6
XM_021589145.2 mRNA upstream 120026 11906126 ~ 11994814 (-) False mib1
XM_036966884.1 mRNA upstream 120026 11906126 ~ 11994814 (-) False mib1
TU2408125 other downstream 254003 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 859995 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 1045576 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 1547399 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 1638678 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 3753668 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 3817585 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 3917236 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 5013290 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 5470108 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile