RNA id: XM_036966222.1


Basic Information

Item Value
RNA id XM_036966222.1
length 9016
RNA type mRNA
GC content 0.53
exon number 33
gene id LOC110508560
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12019354 ~ 12129830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagaggggttctgCTGTACTGGAGGAAGGAGGAGTATTTGCTGTCCATACTGTCGTGGAGTTTAATTACCAAGGAGCTGCTGATGACTTGGGGACACACCAGATGAGAATTAATCAGCCCTACGTCTCCTTGGATATTTCCTCACTCTTTTCCTCTTCGTTAGGACATACCTATCACCCAAAATGGACTATAATTCGTGActttgtgatttatttatttttgcatgGTGGAATTTAGTGTTTGGTTTTGGAGCGTtttatgttgttgtttgtgttatcGAAGTGCTGTCTGGCTGGTGGAGAACCCTTGGAAGGTCTAGAACAGTGCTGCTGAGGGGGATGTCACTGCAGGACGTTTCGACACAGTGGTTCTTCTGACCCATCATGTAGTAGAGGAGAACACATCCCTTCACACCTGGGAACAATTACACAAGATCATGGGGAATTCGTACGCAGGGCAGCTGAAATCTGCTCGCTTCGAGGAGGCCCTCCACAACTCCATCAAGGCCTCCCTACGCTCCAGCAGTGGAGACCCACAGCCCATCTTCACTCAGCTATACCTGGAGCCTGACCAGTATCCTGGCAACATGGATGATATCAAGCCCAAGGTGGACCTGTGCATGCCGTGCGGGGAGCCTAAGGGTCAGGATCTGCTAAACGGCCAGGCCTCTAACGGTCTGGAAGacctggaggaggaggacgacTCTGACACCAGCAGCCCCCCGCTGCCCTACCTCCACCAGGGCCCTGCGCCCGACGGCTGCTGCACCATGGACGGGTTCTGTCAGGCCGGTAAGGACCTCCGTCTGGTCTCCATGGCGACGGAACACATCGAAGTTCCAGCTGGCTTCGAGCTTGTCGGTGCCAAATCCTCCAGCGTCCCAGAGCACATCCTGGTGTGTGCCGTGGATAGGCGCTTTCTGCCTGATGAGAACGGGAAAAATGCACTTttagGGTTTTCAGGGAACTGTGTTGGCTGTGGGGAGAAGGGGTTCCGGTACTTTACTGAGTTCTCCAACCACATCAACCTGAAGCTGGCCACGCAGCCCAAGAAGCAGAAGCACTTAAAATACTACCTGGTGAAGAACTCTCAGGGTGCTCTGTGCAAAGGACCCCTCATCTGCTGGAAAGACTGCAAGACGCGCCAGTTCTCCAATAGCAATGCGTCCACCTCCAAGCCCAGTTCCTCATCCTCCCTGAGTAGCAAGGAGAATGGAGGCACCAACGGACACAGCTCTTCCCCTTTCTCCCTTtcagACTCCCCTCCTACCAGGACTCCCTCTGCCGCCTCTGTGTTCTTCTCAGCCCAGGACCTGGCCCGAGACTGCAGCTTCCTCAAGCCTTTGGCCTCTACCCCTGGGGGCAAGACTCTACCAATAGTACCCATGGCTTTAAGAGTGAACGGGCCGACCAATGGACTGGGTCAAGACGGCCACCCCCCTTTACTGAGCCCCTCTCAGGTGTCTCTGGGACCCCAGGGACAGGGGTACAGAACCTCCGACCTAGGAGACAACCCTGTTTCCTCTGCCATGATCTCAGGCCCGCCCAAAAAGCGCCACCGCGGTTGGCACCCTAACCCCCTGGTGCCAGTCCCCCCTACAGCAGTCCCTGTGTCCGCCATCCGACCCATCGTCTGCTCCCCAGGCTCTGTGCTGGccatgcccactcctcagctgCCTGTAGCAGGTGTCCTTCAGCCCCAACCCGTCACTGCTGGAGAGACTGTCATCGTCCCTGACAACCTGCTCAACACATCAGGAGTCCGTCCTGTTATCCTCATTGGGCATGGCACATTACCATACTTCTATGGGAACGTGGGGGACATTGTGGTGAGCCCTCTGCTGGTGAGCTGCTATAAGGGCAACCAGTTGACTGAGAAGACACTGGCCAGCCTGGGACTGACTGGCAGCCAACTACTCAGTGTGGAGACCATGATCCTCCTCACCCTGCAGTACCTTGCACGGCTAGGTTCGGAGCAGATCCCTCTGAGGGAGGAGTTTGAGCAGATCGTCCTGAAGGCCATGTTAATTTGTCCTGGAGGTCCCTCCATCTCTCCGGCCCAGCTGCCCTGGCTGGCCCGCCTGGAGGCCAGTGTCTCTGGGGGCAGTGTCCAGGTCCTGGTCACCTACAACTCCCTGGGAGAAGGCATCTCTGAGTCCCTGCGCTCGCTCTGTGACGGACCGCCCTACCAGCAGTGCCTGCCCACCTACGTGGTTATTGTGTGTACCTCCAAGATGAGCGGCAACGAGTTCTGTGTGCTCGCCCTGGGGAAGTACCAGGCACGAGCGCTAGCCGAGGGAATGCTCACCACCAATGAGTTCCTGAAGGAGATCAGCTACGAGCTCATAACAGGGAAAGTCAGTGTCCTGGCGTCACACTTCAAAACCACCTCACTCGGGGACAACCTGGACAAGCAGCTGGTGCGTATCCAGCGGAGACGGAAGGGCCAGGTCATCCAGCCCTTCCAGGGCGATGTCACTGACCACATCCACTCCCAGGATGCAGCCACCATGGTGCCACCCTCTGAGTCAGAGCTGCTGAGTGAGATGTTTCAGATCCACCCTCCCCAGCTCAATGTAGCCAGGAGCCTACTCTCCCAGGTGTGCTCCATAGCAGACTCAGGCAGCCAGAGTCTGGACCTGGGACGCTTTTGCAAGGTGGACTTCCTGGTTCTGGTCCCTCCGTCCCACATCCTGGTGAACCAGACTGCTCAACGCATCCGACAATCAGGAGTGCTAGTGGACCTGGGTATAGAGGATGCGTCCTCAGCCCACCAGAGGTCCGACAAGTATGTGGTGCGTCTCGACGGAGACGTCCACGGCAAGATGGAGGCCTTCATGAGGAAGGTCAAACAGAACCCCTACACCCTGTTTGTCCTCATCCACGACAACTCCCACGTGGACctgaccagTGCCCTGTCTGGTTCGGTGTGCCACGGAGAGCTTCAGGGTCTGGCTGACAGGGTGGTAAACTGCCAGGAGGTTCTGGAGGCTATGAATCTGCTGGTGCTGCAGGTCAGCTGCTTCCCATTCACCCTGCAGACACGACAGTCCCGCATCAGCGTCCACAACGAGGTGCACTGGCCAGCCAACACCGAGAGCTTGGGGGAGCTGTCTCCTAAGGAGCTGGTGTACTTTGGCCTGAGGGACTACAGCAGCTCTCTGCAGTGGGGGGTGGCCAGTCCCATCCTGCGCTGTGACGACGCATTCGAGAAGATGATCAACACGCTGCTGGAGagACACCCCCACCTGCACAGCATGGTGATCAGGAGCTACCTGTTGATCCAGCAGTACACTGAAGCCATGATGGCTCTGACCTCCTCACCTTCACTACGGGATCACATCACCCCGGAAACCCTGGCCATGGTGGAGGATCTGATCAGTGCCCCGGGCCGGGAGGGGACCAAGGGCCGGGGCCACATGCTGCTGGTCCGGGTGCCCTCTCTGCAGCTGGCCATGCTGGCCCGGGAACGCCTGGAGGACGTCAGGGACAAGCTGGGTCTTCAATTCTGCTTCGCTGTGCTGCTGGGAAGCCCTGCCACCGAGCTCAGCCTTCCACGACACTTCGCTAACCGACTCAGGGCCTGGCGGGGCTGTGAAATTGAAGACTGGGTCCCTCACACCTATGAGGATCTGGAGGGTCTTCCCTGCATTGTCATCCTCACTGGAAAAGACCCCCTAGGAGAAACCTTTCCAAGGTCCCTGAAGTACTGTGACCTGCGTCTGATCGACTCCAGCTACCTGACACGTACGGCCCTGGAGCAGGAGGTGGGTCTGGCCTGCTCTTACGTGTCCCTGAGGGTGGTAAAGGAGCCCTGCAGGTCCATGGCCCCCAAGAACCCAGAGACAGACAAGACCAGTGGCCCTCAGGACCCAGACCTAGAGCTGCACATGGACTTGGAGAGGCCCCAGAGCAACAGCAGCGCTGCTACCAGAGGCCCTGGCTCTCTGGCAGAGAACAGGGTCAGCTCCTCTGACATCCCTGACTCCTCCCAGaagccctccacctcctcctgccCCCCTGGAGGCAAGGCGGGCAGCATCATGATGGAAGACGGGACTGGCACGACCTCAACATCCCCCCGCCGGGTCAAACAGGAGTGTGACTCCCTGGGCAGTGCCACCTCCCGCCCTTCCAACGCCCCTCCCTctttctgctcctcctcctcctcttcctcctcctcctcttcgacCCAGCACCCCAGCCAGTCTACGCAATGCGGCCTGGGCAGCAAGTCGCCTCGGGTCTCTCCCCGGACTGTCATCCTGTCGCGCGCTGCCTACAACCTCCTGGCTGGAGAATCAGGGAGCCAGCTGAGCTCCTTCTCCCTGCTGCCTCACGCCGATGTGGGCTGGAGCAGCCCGCTGAGGCCCCTCTTCACCCCTAACTTACAAGGGTCAGAGCAGAGCCTCTTCTACAGACAGTGGACCGTAGCCAGGCAACATCATGCCGACCACGAGGCCCCCCCAGGGCCACACCCACGACGCCTGCTGCTCAGCGGGCCCCCACAGGTGGGGAAGACGGGTGCCTACCTGCAGTTTCTACGCATCCTGTTCCGTATGTTGATTAGACTGCTTGAGGTGGATGTGTATGATGAAGAGGAGCTGGAGGAAGCGATGACGGATATGTCCGAGGCCACACCCCCAGCCAGCACCCAGTGGCCAGACATTGAGGAGATCCGCAAACTGCCCTTCGACCTCTTCCCCAGAGACCCTAAATTCAGGAGGGCCAGCACTGTTTACAGTGACAAGATGCCAAAGGGCTTGAAAGATCCTAAACTGGAAGGAGAGAGCAAAATGCCTGTGAAGAGGGAAACTGTGTCGATACGGCTGAGTATGTTCGCAGCCCACAATGCATTTCACCATTGTGATCAGTGTCACCATTACTGTGAAGCCAGCCCAGCCACACAGCTGTCGGAGTGCACATTCCACGCCTTCACGTTCTGCTCGTCCATGCTGGGAGAGGAGGTGCAGCTCCACTTCATCATCCCCAAGGCCAAGGAGCAGCACTTTGTCTTCAGCCAGCAGGGCAGTCACTTGGAGAGCATGAGGCTGCCCCTCATCTCTGCTAAGGACCTCAGTCTGTTGAAAAGTCCCATCTTCACCCCGACCACGGGGCGCCAAGAGCACGGCCTTCTCAACATCTTCCACGCCATGGAAGGCACCGACCACCTCCACATCCTGGTGGTCAAGCAGTACGAGATGCACCACTACAGGAAATACTGGCCCAACCACATCCTGCTAGTGCTTCCTGCCATGTTTAACAGTGCAGGAGTTGGGGCGGCTCGGTTCATGATCAAGGAGCTGTCGTACCACAACCTGGAGCTGGAGAGGAACCGTCTGGAAGAGCAGGGGGTCAAGAGGCAGGACGTCTGGCCCTTTATAGTCATGATGGATGACTCCTGTGTGCTCTGGAACTCACACCaaccccaggacagcagcagTGATATGGCAGACACCGGGCCCAGTCTGACCAACGTGTCTTTAAAGACGGTGCTGCAGCACATGGAGGCCACTCCTAAGATCTCCCTGTATGCCGTGTGCGGGGCCCGCAAGTGGAGCAGTGCCCTGGCCCGCCGCCTGCCAGCCTTGCCCTTCTCCCGATGCCACCTTCACGACTTTGTCATGCTCAACGTTGAGCTGACGCAGAACGTCCAGTACGACCTCAACAGGTACAGTTGTGAGGAGGTGGATTTCAACCTGAGAGCCAACAGCAGTGGTCTGCTGCTCTGTCGCTTCAACCACTTCAGCTTGATGAAGAAACAAATTCTCTTTGGAGGACACAAGGACTTCCTGGTCAAACCCAAACTCATCGTGATGGAGAACCCAACCCCCATCAGCCCATCCCAGTACATCTGTGCCCCAGACAGTGAACACACCCTCCTGGACGCCCCGGCTCAGTTCCTCCTGGAGAAGTTTCTCCAGAGTTGCAGCCACAGACTGTTCCCCAaggcagtacagaacagtagCAACCCCGTGCTGTCCATAGACAGCTACCTCAACATAGGCCCTGAGGTGTCAGTGTGCTACGTCAGCTCCCGACCACACTCCACTAACCTGGACCACCAGGGTCTGGTCTTCAGCGGCCTGCTGCTCTACCTGTGTGACTCCTTTGTCGTCTCTGGCCTCCTCAAGAAGTTCAGCTTCCTCAAAGGTGCCACGTTGTGTGTGATCTGCCAGGACCGTAACTCCCTGCGTCAGACCATCGTACGGCTGGAGCTGGAGGACAAGTGGCAGTTTCGTCTGCGGGATGAGTTCCAGACAGCCAACTGCAGCGAAGACCGGCCCCTTTACTTTCTCACAGGACGCCATGTTTGACCCTGAGACTGCTGCCAGACCTGCCCAAATGGCCCTCCTGTCCCATCCACCCTAACCAGACAGAAGGATACACACTAAccactgatctcagaccagttaACAATCACAACGATTCCCTGTCTGTTAGGGGGATACAACCACTGTTCTCAGATCTGTTTAGCCGACCTCTTGTCACACAGACCCTGATTACGCAGGAGTATAACATCTGTTCTCAGACCAGTTAACAATCACAATGATGTCAGGAGATCAGAGAGGAGTATTGGGGGCACATCAAGGCCAAATAGCCCAAAAAATGGACACGTGGCCGTCATCAATGTGGATGTGATGTCTTCTCCTCCTACAGTATGAGCTCCTCCACAACGCTGCGCTATGTTTGGAACAGAAGTGGTTGGACAGTGAGTTTTAACTCAGACTTGTGTTGGGGTCTGTCCCTAATCTGAGCCTGATTCAAATTCAAAGACTTTACTGTGCAAAAATCGGCATTGTCAGTGAACTTCTGTATATGTTGACGTATTTCTGGCTGCAAAAAGGGACTCTCGTCATCGATAATGGGACTTATTGAAAGATGGTAAACGTGGCGCTGTGGCGAACACAGCTCTTGTCGGGATGTCCCGTCACGGACATACACTTTATCTCAGTTTTGAAGGGAGAGGCAGCAACGAGTTGCCCGTCGCTAAAGGAAAACTACTGCTTTTCTCTCTCGTCTTCAGTGTCAAGTGTTGTTACTTATTACCCATTGTAATGTTGTTGATAACCCTGATATGAGCCACAAAATACATCCACATCTGCACCTtgcctcctctactctcctctcctctcgctaAAATCCCACTCCGTTGTTAGATTACTAGTGTAAATATGATAGATTCTGGAGTGTATTAGAACTCTATCATCTAGGTCTAGTATATCCATTTCTATGCTGCTCAGTCAGAGGAAAAGCGTGTAGTTGAAATCTAAGCCACTGTGTAGTGTACAGTCCTGTCCACTTACATTTGACTGGCAAGCCACCGTAAGGGATCCTGTTGCTCTTGTGCCTTCATATTGCAACATGTTGTCCCTAACTGAACTGTTCCTATGACAATGTCTTTTTGATCATCTAACTGAGCCAATCAAATGGAGCGAGGGAGAGCAGGAAGAGACCTGTTGACCAATCAGTTAGCTCTAAAGGCTTGATGCTCAGATACAAAGTACAATTCTATTTCATGTTATGCGGAGGATGTATATATCCCAGTAGCTCCTACTACTAGATGAGGATGCTATAGAAAGAGCAAAGCTTCAGTGGCACCTCTATCTGTCTTGCTATTGACTGTGCCTGTGGCCTTGTTTATGATTGTAATATTACTCAGTGATCTGTTCTCTGTGCCTGACAGTATAGATAGATGGCTTAGGCCTCCCCCCATATACCTTAATTCATCCAGTCAACTGACTTACAGTTGCAGGGTTTTCACACGAAACTATGGATAATCAGAGAGTGGGCGTGGACTGCTGTCATCATCAGATTAATACTGTAGGTCAATTCATCTTCCTGAAAGCAGGTAGGAATGGTTTTTATATGTTACTGCACAGGGTCATCCAAAGAATATGCCTTATTAAGTGAGGTTGTTACATAGATCACTCATTTGCAGTGAAGGGTAATATTGTAATAAGTCTTACAATGGAGAGGCCAATCCAATTGAAGAAATTGTGACGAAACATCTGTCCGGTTGGGGTTAAGAGGTTAAGTTGGATGTGAGGACAACTGTCTGTTGTTAAAAGCTTTGtttacattattaatatattCAAATCAACCCCGTTACGGCTCGCGGAGGGTTTCTGACCATTTTTGTTTGTATTGTGTCACGTTTAGCGGTAATGTTTGGGTGTCATGATGATGGCTTTCTGTCTGCATTTTTGTGTGTTTGCCAGCCAAGGCGCAAAGAATCTACCTAAGATTTTACCTTCTTACCGTGTACTGGCTTTTCTCATGTCAGATGATtctcatcattttttttttttccttcatgAAAATCATGTCCTTTACATGAGAGATTCTTATTTATTTGAACAAGCATTTTGGACTGATAATCGTATGGAAGTGTAATAATATTGATTGCATGCTGACTGAGCGAGCTCAAATCAAGAAAGCGTAGCCTCTTCTGAAAACCATGGACGAAGGCTTTGCACAAGACAAAGAGCTCCTGAGTCTTATCTACTGAATGTTGAGGGGTAGGAAATGTGAACTTGCACTATACAACTTGCCAGCAGCAACAACCAAAAAAGTATTGATCATTGTCATCAGAACTGTACGGGGTAAATGATGAACAAAGACACCGAGAAAATATTGATGACACTATCAGTAAAGACAGACAGTGTTGATTGACTtatctgattgattgatgatcAGACCCTTCAATATTGATCATACCCTTTTGACCCATAGAATGTGTCTTGTTTGTAGATAATTAGATGAACACATGCAGTAACTTATGCAATTTGCTTCTCACAATCTTCACTGAAGTATTATCTGTTGTGGGTATTTAAGTGTCTTGCTAAAGATTTGGCGACCCAACCCATGGTAGGCTTGGCCACAGAGTCATCTAACTCATGTTGACTATTGCGGTTGTTCAATATGTGGGCTGTGAACATTTAACTTTGGTGAAACATGCTTTTGTTGTTGGAATTTCTGAATCTAATAAAGTGACATTACAATAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2408398 lncRNA downstream 38810 11924465 ~ 11988217 (-) True G2105660
TU2408377 lncRNA downstream 139756 11886493 ~ 11887271 (-) True G2105643
TU2408376 lncRNA downstream 140833 11885901 ~ 11886194 (-) True G2105642
TU2408375 lncRNA downstream 141720 11883048 ~ 11885307 (-) True G2105641
TU2408346 lncRNA downstream 200492 11826087 ~ 11826535 (-) True G2105613
TU2408508 lncRNA upstream 31083 12105038 ~ 12105264 (-) True G2105769
TU2408512 lncRNA upstream 38303 12112258 ~ 12112492 (-) True G2105773
TU2408513 lncRNA upstream 40071 12114026 ~ 12114293 (-) True G2105774
TU2408612 lncRNA upstream 196412 12270367 ~ 12285271 (-) True G2105867
TU2408746 lncRNA upstream 408921 12482876 ~ 12483108 (-) True G2106000
XM_021589145.2 mRNA downstream 32213 11906126 ~ 11994814 (-) False mib1
XM_036966884.1 mRNA downstream 32213 11906126 ~ 11994814 (-) False mib1
XM_036966885.1 mRNA downstream 32213 11906126 ~ 11994814 (-) False mib1
XM_036966886.1 mRNA downstream 32213 11906126 ~ 11994814 (-) False mib1
XM_036966887.1 mRNA downstream 32213 11906126 ~ 11994814 (-) False mib1
XM_021589156.2 mRNA upstream 148139 12222094 ~ 12230902 (-) True thoc1
XM_021589158.2 mRNA upstream 171835 12245790 ~ 12248509 (-) True LOC110508565
XM_021589161.2 mRNA upstream 436725 12510680 ~ 12515518 (-) True myl13
XM_021589163.2 mRNA upstream 564556 12638511 ~ 12666401 (-) False LOC110508569
XM_021589165.2 mRNA upstream 569897 12643852 ~ 12666391 (-) True LOC110508569
TU2408125 other downstream 526955 11499126 ~ 11500072 (-) True G2105419
TU2406504 other downstream 1132947 10886198 ~ 10894080 (-) True LOC110508522
TU2406439 other downstream 1318528 10708012 ~ 10708499 (-) True G2103920
TU2405667 other downstream 1820351 10206063 ~ 10206676 (-) True G2103257
TU2405613 other downstream 1911630 10113428 ~ 10115397 (-) True G2103203
TU2412752 other upstream 3465813 15539768 ~ 15554897 (-) True G2109663
TU2412794 other upstream 3529730 15603685 ~ 15604463 (-) True G2109705
TU2412853 other upstream 3629381 15703336 ~ 15710929 (-) True LOC110508627
TU2414083 other upstream 4725435 16799390 ~ 16799869 (-) True G2110939
TU2414937 other upstream 5182253 17256208 ~ 17257395 (-) True LOC110508646

Expression Profile